Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00275 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGCATCACCAACAATCAAAAGAAGCCTATGGGGGTGGACCAAGAACTTGTGGAGCTTCTGTGGCAAAATGGTCAGGTAGTGTTGCACAGCCAAACACATAGAAAACCAGTAGTGAATTCGATCACACCGAGACCTCTTCAGAGGGCTTTTCAATCAACATTAAGGACTAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAATTCTGTTCAAACCTTTTATCTGAACTGCCACAGTGTGATGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGAGGCAAAGTTTACCAAATTGGATGCTTCTGGTGCCCCCCATGTGCTTGTAAGTTCACAATCACCTACTATGAAATCCTCCTCTTTTCAGGAACTCTCAGGAATTCCTATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAATAATAATGACTTGGGTGGTGGACCATGTAAGGTTCAAAACTTCTCTCACTTTTCACCTACCCTTAATGTTTCTTCAGCATTGCCTAATGGGCGTTTTAGAGACAAAATCACTGGTAACATGTCAAAAAATGAGGTTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACTGTGGTAGCAATCACATGACCCAAGATCCAGATGCTAGCAGGGCATCAAGCAATGGTGTTTGGACTACTACTTTATCTGTTGACCCTGAAGCTGTCAGAGATGATGTGCCAAGAACAATTCCTCTGAGTGAGAAAGGGAAATCAGAGATGCTTGAACCAACTGCTACTTCGTCTTCTGGTGGCTCAGGTAGTAGTCTAGGAAAAACTTGTTCCTTATCCACCAGAAACCAGAGCCAAAAAAGAAAAACAATAGACGTGGAAGAATCTGAGGATCATAGTGAGGACACAGAACTTAAATCACCAGTTGGCAACAAGACATCTCAAAGGACAGGGTCGGCTAGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCAGAAAGGAGAAGGAGAGATAGGATCAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCAATAGAATATTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCTCAAATGGGTATGGGAATGGCTACTTCTCCTTTCCCTCCCATTCAAAATCCAATGCAATTACCACGAGTACCTCTTGATCATCCAGTATCTTCATCTCAGACACCAAACCAGACATTGATGTGTCAAAATCCTATTTTGGGTGCCTTTAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATCAATGTATTTAGATATGGTCCCCAGGCAGTACAACATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGACTGTGAGTGGCAAAATGGGTTCTTCCACCTTTAACTAA 1656 0.4197 MNNSVPDWNFGSDSCITNNQKKPMGVDQELVELLWQNGQVVLHSQTHRKPVVNSITPRPLQRAFQSTLRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQEFCSNLLSELPQCDVESYKQIKPFEEAKFTKLDASGAPHVLVSSQSPTMKSSSFQELSGIPIPAPRFHVSDSPQKNNNDLGGGPCKVQNFSHFSPTLNVSSALPNGRFRDKITGNMSKNEVRECSLMTVGSSYCGSNHMTQDPDASRASSNGVWTTTLSVDPEAVRDDVPRTIPLSEKGKSEMLEPTATSSSGGSGSSLGKTCSLSTRNQSQKRKTIDVEESEDHSEDTELKSPVGNKTSQRTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPMMFPGIQHYMSQMGMGMATSPFPPIQNPMQLPRVPLDHPVSSSQTPNQTLMCQNPILGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPINVFRYGPQAVQHSQTMITPSNSSGNMSGAANIDETVSGKMGSSTFN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00275 551 MobiDBLite consensus disorder prediction 283 312 - -
Vian6g00275 551 MobiDBLite consensus disorder prediction 520 551 - -
Vian6g00275 551 SMART finulus 356 405 IPR011598 GO:0046983
Vian6g00275 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 428 IPR036638 GO:0046983
Vian6g00275 551 Pfam Helix-loop-helix DNA-binding domain 354 400 IPR011598 GO:0046983
Vian6g00275 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Vian6g00275 551 PANTHER TRANSCRIPTION FACTOR PIF3 20 509 IPR044273 GO:0003700|GO:0006355
Vian6g00275 551 MobiDBLite consensus disorder prediction 313 332 - -
Vian6g00275 551 MobiDBLite consensus disorder prediction 333 347 - -
Vian6g00275 551 FunFam Basic helix-loop-helix transcription factor 345 408 - -
Vian6g00275 551 CDD bHLH_AtPIF_like 350 413 IPR047265 -
Vian6g00275 551 MobiDBLite consensus disorder prediction 259 356 - -
Vian6g00275 551 Coils Coil 356 376 - -
Vian6g00275 551 Gene3D - 345 406 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00275 Vian-Chr6 8891606 8896002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00275 1 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 38.889 5.39e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian6g00275 HLH 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00275 K16189 - gmx:100784531 939.488