Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00258 ATGAAGAGGCGGATTGCAAATGTTCTTGAACCTGGGGAAACGGTTTTGCAAGCCTTGAGAAGGCTAAAAGGTAACAGTGACAGAAAGGCAAAAATGTCTGCTGAGATTAAGGCTGTATTTGACCAGCTAATTGAGGATGCTATGAAGCTGATGGAGAATGATGTTTATCATGAAAAGCGAGAGGTTTTTGATCGTGAAGCGGGGATAGATCCGTATGTAAGACCGTATGCTTATTCTTCCTCATGGAGCGTTCTTCTCTATGCTACTGCAACCTTCTCCCTCGTTGAACCTCTCTCGAAGCCTAACTTGAAGTCTCCTCTGTCGAACGCAGTGAAAGGCTCTTCTATCGAACACACTAAAGGGCTTGGAAGCGTTTTCCCTAAATGTGGTTGTGCGTCGTTGCCTGCGGAAACAATCTCCTTCACCAAACACTGTTGGTTTGTTCCCGTTGGAAGAGATAAGGTGGAGCTCCAATTGCCTTCTGCACCTGGTAGCTTTGAAGACTCCTCTCAACTGCTGGATCCCTTGACTGGATGTGCTCGGAAATTTGCAGCTGCTGCATGCGAGTTGTATCCTCCAAGAACCGTATATGATGTTGTTGTTGGAGACATTGCAATTGTAACTAACCGTACAAGGATTGTGGATTTTTCTCAGCCTTTTGCATCATCTAGCCTTGTCATAGTGGCTCCTAACAACAAATCAGGATCAAGTGCTTGGAAACCAACCTTCAGTGAAGACCACGTGTGGCGGTTGGAACAGAGACGATTGCCTAAGGTGTGGGTGGGACTGACAACCCGAAAAACCCCTCTTTTTGGTCCACCGAACAGCCCAAACTTCGGCGAGACTCCGGCGAACCTCCCGCGGCACTCCGGCGGCACTCCGGGACATGGACGGAACCACTTGGGACGAAGCGACACCTTCAACGCCTCCCTAGGTCGCTGGGCCGGAACGGAGGAAACACGATGCCGTGTTCGCGTCGAGCGCTCCACGTCGGAGCTGCGGCGCCGTCAAACGAAACGGGCTGGAGGCGTCACACCATCCATCCCCAATGTTCGCGCCGCTTCTCTCTCTACGAAGTTCGAATATCATTTCAAATTTGAAACGCACACCCTAAACTGCCCATGCCCGTCCCTCGCCACGTCACAGTTGAAGCAGGTGGAGCATGATTTTGATGACGATGGTGAGGAGGATGATTTTGATGTCGACAGCGGAGAGGAGGAGGATGGGCAGAAGCTAACAGATGATGAGGATGATGGGACAAGAGAGCATAGTGAATGGAACAATGATGAGATGGAACAACTTGAGAAAGAATATAGACATCTTCATCATCAGGAGTTAGATACTTTAAAGAACTTGAAGCATCATAAGGATGAAGATCTTCTCAAGGGTCAAGCTTTGAAAAGCCAAAAGGAAGTAGAGAGGATCAAACCTGCAGCTGTAGTTTTTGGGAACCAGAGGCTGAGGCTTCATTCAAAGATTTGGGCATTGGAACATATAACAGTTTATCCTTTGTCGGCCATTAACTCTAATGGATTCCCCCGTTATTTGAAATGGGATGGAGTTGACATTGATTTGGACTCTATTCAACATTGTTAG 1596 0.4806 MKRRIANVLEPGETVLQALRRLKGNSDRKAKMSAEIKAVFDQLIEDAMKLMENDVYHEKREVFDREAGIDPYVRPYAYSSSWSVLLYATATFSLVEPLSKPNLKSPLSNAVKGSSIEHTKGLGSVFPKCGCASLPAETISFTKHCWFVPVGRDKVELQLPSAPGSFEDSSQLLDPLTGCARKFAAAACELYPPRTVYDVVVGDIAIVTNRTRIVDFSQPFASSSLVIVAPNNKSGSSAWKPTFSEDHVWRLEQRRLPKVWVGLTTRKTPLFGPPNSPNFGETPANLPRHSGGTPGHGRNHLGRSDTFNASLGRWAGTEETRCRVRVERSTSELRRRQTKRAGGVTPSIPNVRAASLSTKFEYHFKFETHTLNCPCPSLATSQLKQVEHDFDDDGEEDDFDVDSGEEEDGQKLTDDEDDGTREHSEWNNDEMEQLEKEYRHLHHQELDTLKNLKHHKDEDLLKGQALKSQKEVERIKPAAVVFGNQRLRLHSKIWALEHITVYPLSAINSNGFPRYLKWDGVDIDLDSIQHC 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00258 531 MobiDBLite consensus disorder prediction 390 413 - -
Vian6g00258 531 MobiDBLite consensus disorder prediction 327 346 - -
Vian6g00258 531 PANTHER PROTEIN LIN1 2 67 IPR039905 GO:0005682
Vian6g00258 531 SUPERFAMILY Periplasmic binding protein-like II 197 237 - -
Vian6g00258 531 MobiDBLite consensus disorder prediction 390 425 - -
Vian6g00258 531 MobiDBLite consensus disorder prediction 271 307 - -
Vian6g00258 531 Gene3D - 193 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00258 Vian-Chr6 8385548 8401237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00258 197 239 Ion Channels AT1G42540 67.442 1.28e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00258 K13099 K14782 gmx:100820157 119.398