Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00234 ATGAATGCTAAAGTACAAGACTCTGATGATACCAAAAAGGGTGAAGAAGTTGTGCTTCCTGGCTTTAGATTCCACCCTACAGATGAAGAACTTGTTGGGTTTTATCTCCAGAGAAAGGTGGAAAAGAAGCCTCTCAAAATTGAACTCATCAAACAGGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAACATTTGAAAAAAAGTGCTTCTTGGGATGAGGTGTGGACACTGTGCAGGATCTTCAAACGCATCCCATCTTTCAAAAAGTACAGTCCAAATTTGAAAGACACGACAGCCCTGACGAAATCGAACACTGTGAATTCGAACACAAGCACCTTAGATTCTGAGAACTGCAAGCCATATTTGATCTGCAGAGACCCTGATATGATGCAACAACTAAAGCCAGTTTTTGGACAGGTTGATGAAAAGAAACACTTGTTTCTTGGGCAGTTTGGGCAACTACCCCATCTTCAACCACCATCAACCCCTTACCCAACTTTTTGGAATCACAATGTTGAAGACTATGCATTTGCCAATGAAAATTGGGATGATCTCAGATCTGTCGTTCAGTTTGCCATTGATCCTTCCTCGGTCTTTGATTGTACAGAAACACATTTTCCACCCTACTTTTCTTAG 642 0.4081 MNAKVQDSDDTKKGEEVVLPGFRFHPTDEELVGFYLQRKVEKKPLKIELIKQVDIYKYDPWDLPKHLKKSASWDEVWTLCRIFKRIPSFKKYSPNLKDTTALTKSNTVNSNTSTLDSENCKPYLICRDPDMMQQLKPVFGQVDEKKHLFLGQFGQLPHLQPPSTPYPTFWNHNVEDYAFANENWDDLRSVVQFAIDPSSVFDCTETHFPPYFS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00234 213 SUPERFAMILY NAC domain 14 68 IPR036093 GO:0003677|GO:0006355
Vian6g00234 213 ProSiteProfiles NAC domain profile. 18 156 IPR003441 GO:0003677|GO:0006355
Vian6g00234 213 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 68 - -
Vian6g00234 213 Pfam No apical meristem (NAM) protein 20 77 IPR003441 GO:0003677|GO:0006355
Vian6g00234 213 Gene3D NAC domain 27 77 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00234 Vian-Chr6 6924343 6928897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00234 6 65 NAC Transcription Factor Family AT1G26870 71.667 8.61e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian6g00234 NAM 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00234 - - gmx:100819795 234.958