LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian6g00191	ATGCTCCCTCTGCGTTCGCAATCACAGGTTGGGGGACTACAAACATCACTGTCTCTTGTTTCTTCAGATCCTGTTCTGTCTCCTGACGAACCAAGATCAAACTCTGACAATCTCCGTGAATCTCCGGCTGAAAGTGCAAGTTCTCAAGAAACATGGCCTACAGCTGATGCAGCTACAACAAAGAAGACGGAGAATGGAAAAGCAGAGATTAATTGCCTTGAGCAGAATGTGATTCACCGTGTTTCTAGTGCAGACAAAGTTACTCTTCAGGACATTGCCAGAGAAAGTGTCGGTACAATATGTGAAAAAATGCATCGTCTACCTGAGGAGTATCTAGAAGAGTTGAAAAATGGACTTCGAGTTATCCTTGATGGAGGGAATGGTTCACAGCATAGAGAAGAATTTTTCATTTTGCAGAAGTTTGTTCAGGGCAGAACTGATTTGACAGCCAAGACACTGGTCAGAGCACATCGAGTGCAACTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTTTCACAGAATTCCCTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCGTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCAACGGCACTAATGGTTTCTGCAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAGGTGAATACTTGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTCAGCAACTTATTTGCATTGGCCCTTCTTCAAAGAGCGGGGTGGGACCCACTGAAATGGTTTTCCGGTGTCAAGCTTGCAATAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTTTTCCAGCACTGTGCACCTTCATGGGATGGAGAAGCCTTAATGAGGGAACTTGATTATGTTAGCAGGATCTTTCACGGGAGTAAAGACCCTCGAGGGAGGAAGTTGTTTTGGAAGTGTGATGATCTGAAGGAAAAATTGAAAACTAAAAAAGTAGATTCAAAGGCTGCTTGCAGGGCAATTTTGATGTTTTTCCAAGAGCTTGAGGTAGACTCTCCAAAAGGCTTGGAAAATGGAGAAAGTGGAAGGTTGATTGCTCCACAAGATGCATGTAATAGAATTGCTGAAGTAGTGCAGGAGGCTATAAGAAAGATGGAAATAGTAGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCATGGCCCTCGAAGCTTGCGATCGTGAATTAGCTGACAAATCCAGGGAAGTGGCAGAGCTCAAGATGGAGAGGCAGAAAAGGAAGCTACAGATAGAAGAGTTGGAGAAAATTGTGAGGCTCAAAAATGCGGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTCCAGAGGATTTCTCTTGCCAAGCAAGATAAATCAGAAGAAGAATTTACTAGCAACTACCTGAAACAACGATTAAACGAAGCCGAGGCTGAGAAACAGTATCTTTACGAGAAGATCAAATTGCAGGAGAGTTCTCGTGCTTCACAGAGCAGTAGTGGTGGTGACCCCTCTCAGATGCTGATGTATTCCAAAATCCATGATCTGTTGTACAATGCTCCTCCCAAACCAGACACTCAGGGCCACCCTTTTCGGACAAATCCCTGA	1695	0.4395	MLPLRSQSQVGGLQTSLSLVSSDPVLSPDEPRSNSDNLRESPAESASSQETWPTADAATTKKTENGKAEINCLEQNVIHRVSSADKVTLQDIARESVGTICEKMHRLPEEYLEELKNGLRVILDGGNGSQHREEFFILQKFVQGRTDLTAKTLVRAHRVQLEILVAINTGIQGFLHPSISLSQNSLIEIFGYKRCRNIACQNQLPADDCTCEICNGTNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRQQLICIGPSSKSGVGPTEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDYVSRIFHGSKDPRGRKLFWKCDDLKEKLKTKKVDSKAACRAILMFFQELEVDSPKGLENGESGRLIAPQDACNRIAEVVQEAIRKMEIVADEKMRMFKKARMALEACDRELADKSREVAELKMERQKRKLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRISLAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRASQSSSGGDPSQMLMYSKIHDLLYNAPPKPDTQGHPFRTNP	564

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian6g00191	564	PIRSF	UCP025218	2	552	-	-
	Vian6g00191	564	MobiDBLite	consensus disorder prediction	1	63	-	-
	Vian6g00191	564	SMART	PHD_3	225	285	IPR001965	-
	Vian6g00191	564	Coils	Coil	456	488	-	-
	Vian6g00191	564	Pfam	PHD - plant homeodomain finger protein	195	318	IPR032881	-
	Vian6g00191	564	MobiDBLite	consensus disorder prediction	519	564	-	-
	Vian6g00191	564	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	487	509	IPR004082	-
	Vian6g00191	564	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	160	175	IPR004082	-
	Vian6g00191	564	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	145	160	IPR004082	-
	Vian6g00191	564	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	305	324	IPR004082	-
	Vian6g00191	564	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	448	468	IPR004082	-
	Vian6g00191	564	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	103	125	IPR004082	-
	Vian6g00191	564	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	186	207	IPR004082	-
	Vian6g00191	564	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	232	252	IPR004082	-
	Vian6g00191	564	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	22	548	IPR004082	-
	Vian6g00191	564	Coils	Coil	419	453	-	-
	Vian6g00191	564	Pfam	Coiled-coil region of Oberon	413	546	IPR032535	-
	Vian6g00191	564	MobiDBLite	consensus disorder prediction	519	535	-	-
	Vian6g00191	564	CDD	PHD_OBE1_like	225	284	IPR047578	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian6g00191	Vian-Chr6	5121334	5123494	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian6g00191	195	297	PHD Gene Family	AT5G57380	33.654	4.82e-10	60.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian6g00191	-		-	vum:124846085	1126.31