Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00185 ATGAAGAAGCTTTCTCTTTATGCTTGTTTACTCAATTTGAGTTTCTTGGTTCTTCTTCCTCATAGCAAAGCCAATCAAGCTGATAAACTTGATGAGTTGATTCTGTCTAGGAGCTCACAGAAGCCTCCTGTGACTCTTTCTTGGGCAGAGGAAGATGCATTGAAAACTCATTCTTCTGCTTATGTTGCACCCCAAGAGGGACTTCAACAAGCTGATAAGATTGTTGCATTGCCTGGCCAGTCATATGGGGTAAATTTTGATCAGTATTCAGGCTATGTCACTGTTGATCCAGAGGCTGGAAGAGCACTTTTCTATTATTTTGTGGAGTCTCCATATAACCCTTCAACTAAACCATTAGTATTGTGGTTAAATGGAGGACCTGGTTGCTCCTCATTGGGGTATGGCGCCTTTGAGGAATTGGGACCTTTCAGAATAAACTCTGATGGAAAAACACTCTATCGTAACAAAGATGCTTGGAATGAAGTGGCAAATGTGTTGTTCTTGGAATCCCCAGCTGGAGTGGGCTTTTCCTACTCAAACACTACTTCAGACTATGATAATGCAGGAGATAAATCTACTGCTAATGATGCCTATGTTTTTCTCATCAATTGGCTAGAAAGGTTTCCACAGTACAAAACTCGTGATTTCTACATAACTGGGGAGAGCTATGCTGGCCATTATGTGCCTCAGCTTGCATATACTATTTTGCTCAACAATAAATACAGTCCCCAAAGTATTAACCTCAGAGCCATTGCTATTGGGAATGCTTGGATTGATGATGTTACAAGTGTGAAGGGGATATTTGACTACTTATGGACTCATGCTTTGAGCTCAGATCAAACACATGAGTTGATTGAGAAGTACTGCGATTTCACTGCTGAAAATGACTCAGCAATATGTGCCAATGCAACAAGAACTGCCCTTATTGAAAAAGGAAAGATAGACTTCTATAACATCTATGCTCCATTGTGTCTTGACTCTTCTATCAAAAATGGATCAACTGGCTCTGTATATGATTTCGACCCTTGTTCTGATTATTACGGGGAAGCCTACCTAAATAGGCCAGAAGTCCAACTAGCTCTTCATGCGAAACCCACAAACTGGACCCACTGCAGTGGTGATACTGATGCAAGGGTGCCAGTCACATCTTCCAGATATTCAATCAACACCCTCAAGCTACCTATCCAGGTTCCTTGGCGTCCATGGTATTCTGAACAAGAGGTTGGAGGGTATGTGGTGAAATACGAAGGAATTACATTTGTTACAGTTAGAGGAGCAGGACATTTGGTTCCGAGCTGGCAACCAGAACGGGCTCTCACCTTCATCACTTCCTTCCTCTATGGAACCTTGCCTCCTGCTTCACCATGGAAGGCTTTTTAA 1380 0.4225 MKKLSLYACLLNLSFLVLLPHSKANQADKLDELILSRSSQKPPVTLSWAEEDALKTHSSAYVAPQEGLQQADKIVALPGQSYGVNFDQYSGYVTVDPEAGRALFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNKDAWNEVANVLFLESPAGVGFSYSNTTSDYDNAGDKSTANDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLAYTILLNNKYSPQSINLRAIAIGNAWIDDVTSVKGIFDYLWTHALSSDQTHELIEKYCDFTAENDSAICANATRTALIEKGKIDFYNIYAPLCLDSSIKNGSTGSVYDFDPCSDYYGEAYLNRPEVQLALHAKPTNWTHCSGDTDARVPVTSSRYSINTLKLPIQVPWRPWYSEQEVGGYVVKYEGITFVTVRGAGHLVPSWQPERALTFITSFLYGTLPPASPWKAF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00185 459 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Vian6g00185 459 Gene3D alpha/beta hydrolase 69 325 IPR029058 -
Vian6g00185 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Vian6g00185 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Vian6g00185 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 418 431 IPR001563 GO:0004185|GO:0006508
Vian6g00185 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Vian6g00185 459 FunFam Carboxypeptidase 68 326 - -
Vian6g00185 459 SUPERFAMILY alpha/beta-Hydrolases 75 449 IPR029058 -
Vian6g00185 459 Gene3D - 343 373 - -
Vian6g00185 459 Pfam Serine carboxypeptidase 78 372 IPR001563 GO:0004185|GO:0006508
Vian6g00185 459 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 75 435 IPR001563 GO:0004185|GO:0006508
Vian6g00185 459 ProSitePatterns Serine carboxypeptidases, histidine active site. 418 435 IPR033124 GO:0004185
Vian6g00185 459 FunFam Carboxypeptidase 357 448 - -
Vian6g00185 459 Gene3D - 374 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00185 Vian-Chr6 4943826 4947030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00185 372 448 Calmodulin-binding Proteins AT2G22960 30.769 1.23e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00185 K16297 - gmx:100779407 833.172