Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00184 ATGTGGGAAAATGGTGCTTTGAGGAACCCCAATAACCTAAAATCTTCCACTGAAAGGAAATTAGCTTCTTTGGATCTTAAATTAGGTTCAACTTTGGATAAGAAACATTCCATCTCTCAAATTCGGAGGGAAATAGTTAACGAATATGCGGAGGCGGCTGTCGAGCTTGGGCGACAATCGGTAGTGTTGGAACGGGAAGTAGAGGAAGGCGAAGAAGGCATGAGGACGCGGGTTCATCAACTGGAACGCGAGTGTTCCTTGATGAAGAGAGTAATCGCCAAGTTTGATAAGTTCGACGAAAGCGATGGCCGTGGCGGCGGTTGGAGGGCGTCGCTGGGGCGGAAGTTTGAAATGTCCACTACTTCTATTTGTCAAAAAGATTTGTTAGTTGATGGCTCGCTCCAAGAGGCTTGGATAGCCATTCTTCATGGTATAGTGAGGCAGGGATTGGAATCCATGAATCAAGAAGTAGAGGTGCAGCGGAATAATGAAGTTGAAACCTTCTCTGCAAATCTCTCTCCCAAGAAGACCGAGTGGACCCAATTTGGGAAACAGGATCCCAACCCGCCTGTGGTATTGTCGGAGAACCAGCCGGAGAAGAAGCACTACAGAGGAGTCCGCCAACGACCTTGGGGAAAGTTCGCCGCCAAGATTCGCGACCCGAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGACACCGCCAAGGCCTACGACCGTGCTACCTTTAGGCTTTGCGGCTCAAAGGCTATCCTCAACTTCCCGCTTGAAGCAAGCGCAGTGGAGGAGGTCGCCGACGCCGAAGGCGAAAAAAAGCAACGCCGCGAGGAGGAGGAGGTAGAAGAAGTCAAGCCGGTTGTGAAGAAGGAGAAAACAACGGAACAAGAGGTGAAATGTTTTCGGGAGTTTTCGGAAGTGCCAAAGGGGGCGATTGTGATTGACCCTAATATGCTGGAAACGGTGGGAAAGTTCGTGTACAGTGACTCGTTGGGGGGTACCTTGGGGGTTGGACGGTTCAAAATACCACTGGATGGAAGTCTATATGGAGAACTAGATGCAACATTGGGTCTAAATGAACATGGGAAAGGCATGGACTTGTGCAGCATAAACCCTAATCATCTAGGAAAGAAATAA 1134 0.4965 MWENGALRNPNNLKSSTERKLASLDLKLGSTLDKKHSISQIRREIVNEYAEAAVELGRQSVVLEREVEEGEEGMRTRVHQLERECSLMKRVIAKFDKFDESDGRGGGWRASLGRKFEMSTTSICQKDLLVDGSLQEAWIAILHGIVRQGLESMNQEVEVQRNNEVETFSANLSPKKTEWTQFGKQDPNPPVVLSENQPEKKHYRGVRQRPWGKFAAKIRDPKRGSRVWLGTFDTAKAYDRATFRLCGSKAILNFPLEASAVEEVADAEGEKKQRREEEEVEEVKPVVKKEKTTEQEVKCFREFSEVPKGAIVIDPNMLETVGKFVYSDSLGGTLGVGRFKIPLDGSLYGELDATLGLNEHGKGMDLCSINPNHLGKK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00184 377 ProSiteProfiles AP2/ERF domain profile. 202 255 IPR001471 GO:0003700|GO:0006355
Vian6g00184 377 SMART rav1_2 202 261 IPR001471 GO:0003700|GO:0006355
Vian6g00184 377 MobiDBLite consensus disorder prediction 179 206 - -
Vian6g00184 377 PANTHER DNA-BINDING DOMAIN 176 288 IPR044808 GO:0003700|GO:0009873
Vian6g00184 377 CDD AP2 201 255 IPR001471 GO:0003700|GO:0006355
Vian6g00184 377 SUPERFAMILY DNA-binding domain 202 256 IPR016177 GO:0003677
Vian6g00184 377 Pfam AP2 domain 202 241 IPR001471 GO:0003700|GO:0006355
Vian6g00184 377 PRINTS Ethylene responsive element binding protein signature 203 214 IPR001471 GO:0003700|GO:0006355
Vian6g00184 377 PRINTS Ethylene responsive element binding protein signature 237 257 IPR001471 GO:0003700|GO:0006355
Vian6g00184 377 Gene3D AP2/ERF domain 201 257 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00184 Vian-Chr6 4929386 4940363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00184 174 294 AP2-EREBP Transcription Factor Family AT5G47230 60.630 6.66e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian6g00184 AP2 6.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00184 K09286 - gmx:100816039 155.221