Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00175 ATGTATTCTTCTTCATCAAGCTCCGCGAAGTGTTCAAGATTAGGCCGTAGCTTCCGAGCTCCGTCTCTCGGTAGTTATCAAGGAATTCGGCCAACTCCTTCGATGGAAAATGGAACACTTGTGGGAACTGTTGTAAATGTTTTCAATAGTGGAGCCAACGACCTACTACAAGTTGCACTTGATTCATCTTTTGATATGCTTGATAAGAGTGGCAAGTCAAAGTCGCATGAACAGATGTATCTGATCAACTTGTTTTGTATTATGGGAGAAGAGAAAAAGGAAGAGAAGGAAGAGAATGAGTTGTTGAAAATGAAGGAGAGTGAGAGAAAGGGTGCAGTACTAGTGAATAGAGGGATCAATTCCGCTAAACTGACTTTGATCAACCAATGCAACTACACGGTGTGGCCAGCTCTGACTGGTAACGTCAGTCTTTCAACCACGGGGTTCGTTTTTCCAAGCGGCGAAAATTCCAGTGTCAATGTACCCGTGAATTGGCTGGGTCGAATCTGGGGCCGTACACTCTGCACCACCGACTCAATAACCGGAAAATTCTCTTGTGCTACCGGCGACTGCAGTTCTGGCAAGATAGCATGTAATGGAAGTGGAGGCTCTCCACCGAACACGCTGGTGGAGTTCAGTTTAGACGGCTTCAACGATATTGACTTTTATGACGTGAGCTTGGTGGACGGGTTCAACCTGCCCCTGATTGTTGTTCCCATAAGTGGTTCCGGCAGCAACTGTAAGAGCACGGGGTGCGTGGTGGATTTGAACGCAGTGTGTCCGGCGGAGCTAAAGGCAACCAGAAATGAGGAAGTGGTGGCATGTCAGAACCCTTGCAGTGCGTTCCAAGAGGACTATTTTTGTTGCGTCGGGAACCGTTCCTCTCGAAGGGTTGGTGACTCACTCATTGCTGGTAATGAGACATCTACGTGGCTTTCTCCTTCAGGTGATTTTGCATTTGGCTTCTACCAACTTCCTAATGAGCTTTTCTTACTGGCTATATGGTATAACAAGATACAAAATAGGACCATCATTTGGTATGCAAATGGAGACAACCTTGCTCCAATAGGATCAAAGTTAGAACTCAACGACTCTCGGGGACTAGTACTAAAAAATCCGGAAGGTTTAGAGTTATGGAGATCAAATTTTACCTCAAGTGCAGTTTTTACTGGTCAAATGAATGATGATGGAAATTTCCAACTATTAGATCAAAATTTTGTGTCATTATGGGAGAGTTTCACTCATCCAACTGACACATTGGTTCCAACTCAAGTAATGGAGTTAGGTGGAGAACTCTCTTCTCGACAAGGACAGCTCAACTTCTCAACTGGAAGGTTCAAACTTTATCTACAACACGATGGGAATCTTGTGCTTAAGCTTATAAATTTGCTTAGCAACTATAGTAATGCTGTTTACTTTAATACTGGTACTGCTGATTTAAACAACCAAACAAATGTTGGCAAGAGATTTGTATTTGATAAATCAGGCTTCTTGTATGTAATGAAGAAAAGTGGGGAAAAGTTCAATGTCAGCACATCAAACGATACCATCTCTTTTAATGATGTCTACTACAAAGCAACACTCAATTTTGATGGAGTTTTGACTGTATCATATTATCCCAAAGATCCAAACAAAGAACAAAAGTGGGTCACTTTAAAGACAATACCAGAAAATATTTGTCTAGATTCTACTTTCACAGATGGTGGAGGAGTTTGTGGATTTAATAGCATATGCAACCTGAAAGATGACCAGAGACCCATGTGTAACTGCCCAGAGAAATATTCTCTAATTGATTCAAATAACATGTATGGTGGTTGCATACCAAATTTCCAAGTAATTTGTCAAGGAGGTGGTCAGATGGGTTCACTAGATGATTACATGATGAAAGAGTTGCAAAACACTGACTGGCCAAAATCGGATTATGAAACAGTAAGTCCTTGTACTCTAGAACAGTGTACAAAATCTTGTTCGCAAGATTGCTTATGTGTGCTGGTTACTTTCAGTGGAAATTCTTGCTGGAAGAAGAAGCTACCACTCACAAATGGGAGAAGAGGTAAAGAAGTAAATGCAACTTCTATCATGAAATTGATGAAAAATGATGAGCTCTTGACTCCTTTACCAAACAAAAAGATGAAAGAAGATCATGATACCTTGATCATCGTGATATCAGTTCTTTTGGGCTTCTCTGTGTTGGTCATTTTAATGTTGGTTGGTACAATGTATTTTGGTTTCTCCTACAACCGGAAGAAGATCAAAAGTGGTGGAACCAACGATGGTGTTGTTGGGAAAAACTTGCGTAACTTCACCTTCAAGGAACTTGTAGAAGCAACAAGAAACTTTAGTGAAGAACTGGGAAGGGGATCTTTCAGCATTGTGTACAAAGGAAGAATAGACATGACAAGTGTGGCTGTTAAGAAATTAGACAAATTGTTTCAAGACAATGATAAGGAATTTCAAACTGAAGTGAATGTAATAGGTCAAACTCATCATAGGAATCTGGAGCTTGCTGATGAAGAAAAAGGGATATTGACAGATTGGGCATATGATTGCTACAAGAGTAGAAGACTAGACATTCTTCTAGGAAATGATGATGAAGCTATTAATAACATTAATAGTTTTGAAAAATTTGTCATGGTTGCTCTTTGGTGTATTCATGAAGATCCCTCTCTTAGGCCAACAATGAAGAACGTTTTGCTGATGCTGGAAGGAATTGTTGAAGTTTCAAAACCCCCAAATCCCTACCTTTACAGTTCTGCCAAAAATGCCATGGATACAAAAGTTGAACGAGAGATACTGAGTAAGCTTTTAACAGCTCGACTTGTCGAACGTTGTCCTGTCCCTGAGTCAGTTGTTTCTACCTCATTTAAAGAAACTATTACTAGGAAGCGGGGTGCTAAGTCTGGCAAGAGAAGAATGGAAGAAATGGCATCTGTAGGTCTGGACACTACTTCACTTGATGACGATGCTTTCAATTTGGAAGCAGCGCAGGATAAATGTATACTGAGGCTTATAGCATCATGCTGCAACAGGCTGGCATTGGATAACAAGTTTGTTTTGATTGAAGGAGGACAGGGTTTAGGAGAAACCCGTGTCTGGATTTTGGCTGATGTGGTGGTGCCACTGGCTGTAATGAGAATTGGACTGTGTTTTAGCATTAAACAGAGGAGTGAGAGCTATAGATTCAGTGATGGTGCAAATGATAACACTGCTGATGATGTCAGGTCATTTGCCGATGGGTTTCCAAATATATACATAAATAATGCAGAAGAACTCCGAGGTCAACATGTTGCTTTTTTGGCATCTTTCAGCTCCCCAGCACAAGTCTTTGAACAACTTTCTGTCATATATGCACTCCCTCGTCTATTTGTTGCTTCCTTCACATTGGTATTGCCTTTCTTTCCAACTGGATCCTTTGAGCGAATGGAGGAAGAAGGAGATGTAGCAACTGCCTTCACCCTTGCAAGGATGTTGTCAAACATTCCAATTTCAAGAGGAGGCCCAACCAGCTTAGTCATATATGACATTCATGCCTTGCAGGAGAGGTTTTATTTTGGAGATGAAGTCCTGCCTTTGTTTGAGACGGGTATTCCTCTCTTAAGGCAGCGTCTGAGCCAGCTTCCCGATGCTGATAATGTAGTTATTGCATTTCCAGATGATGGTGCATGGAAGCGATTCCACAAGCTGTTTGATAATTTTTCAGTGGTTGTATGTACTAAGGTTCGTGAAGGTGACAAGAGGATAGTTCGGCTCAAGGAAGGCCATGTCTCTGGTCATCATGTGGTTATTGTTGATGATTTGGTCCAATCTGGAGGCACCTTGGTTGAGTGTCAGAAAGTTTTGGCAGCCAATGGTGCAGCAAAGGTGAGTGCCTATGTCACCCACGGAGTGTTCCCTAACCAATCATGGGAGCGATTCCTTCATAAAAGTGGGTCCTTGGAGAATGCATTTTCCTACTTTTGGATCACAGATTCTTGCCCTCTTACTGTCAAAGCTATTGCAAATAAAGCTCCTTTTGAAGTATTGAGTCTAGCCGGGTCTATTGCCGATGCTCTACAAATATGA 4062 0.4153 MYSSSSSSAKCSRLGRSFRAPSLGSYQGIRPTPSMENGTLVGTVVNVFNSGANDLLQVALDSSFDMLDKSGKSKSHEQMYLINLFCIMGEEKKEEKEENELLKMKESERKGAVLVNRGINSAKLTLINQCNYTVWPALTGNVSLSTTGFVFPSGENSSVNVPVNWLGRIWGRTLCTTDSITGKFSCATGDCSSGKIACNGSGGSPPNTLVEFSLDGFNDIDFYDVSLVDGFNLPLIVVPISGSGSNCKSTGCVVDLNAVCPAELKATRNEEVVACQNPCSAFQEDYFCCVGNRSSRRVGDSLIAGNETSTWLSPSGDFAFGFYQLPNELFLLAIWYNKIQNRTIIWYANGDNLAPIGSKLELNDSRGLVLKNPEGLELWRSNFTSSAVFTGQMNDDGNFQLLDQNFVSLWESFTHPTDTLVPTQVMELGGELSSRQGQLNFSTGRFKLYLQHDGNLVLKLINLLSNYSNAVYFNTGTADLNNQTNVGKRFVFDKSGFLYVMKKSGEKFNVSTSNDTISFNDVYYKATLNFDGVLTVSYYPKDPNKEQKWVTLKTIPENICLDSTFTDGGGVCGFNSICNLKDDQRPMCNCPEKYSLIDSNNMYGGCIPNFQVICQGGGQMGSLDDYMMKELQNTDWPKSDYETVSPCTLEQCTKSCSQDCLCVLVTFSGNSCWKKKLPLTNGRRGKEVNATSIMKLMKNDELLTPLPNKKMKEDHDTLIIVISVLLGFSVLVILMLVGTMYFGFSYNRKKIKSGGTNDGVVGKNLRNFTFKELVEATRNFSEELGRGSFSIVYKGRIDMTSVAVKKLDKLFQDNDKEFQTEVNVIGQTHHRNLELADEEKGILTDWAYDCYKSRRLDILLGNDDEAINNINSFEKFVMVALWCIHEDPSLRPTMKNVLLMLEGIVEVSKPPNPYLYSSAKNAMDTKVEREILSKLLTARLVERCPVPESVVSTSFKETITRKRGAKSGKRRMEEMASVGLDTTSLDDDAFNLEAAQDKCILRLIASCCNRLALDNKFVLIEGGQGLGETRVWILADVVVPLAVMRIGLCFSIKQRSESYRFSDGANDNTADDVRSFADGFPNIYINNAEELRGQHVAFLASFSSPAQVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTLARMLSNIPISRGGPTSLVIYDIHALQERFYFGDEVLPLFETGIPLLRQRLSQLPDADNVVIAFPDDGAWKRFHKLFDNFSVVVCTKVREGDKRIVRLKEGHVSGHHVVIVDDLVQSGGTLVECQKVLAANGAAKVSAYVTHGVFPNQSWERFLHKSGSLENAFSYFWITDSCPLTVKAIANKAPFEVLSLAGSIADALQI 1353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00175 1353 FunFam Serine/threonine-protein kinase 417 563 - -
Vian6g00175 1353 Gene3D - 1059 1200 IPR029057 -
Vian6g00175 1353 Pfam Thaumatin family 128 295 IPR001938 -
Vian6g00175 1353 SUPERFAMILY alpha-D-mannose-specific plant lectins 330 477 IPR036426 -
Vian6g00175 1353 Pfam Phosphoribosyl transferase domain 1250 1302 IPR000836 -
Vian6g00175 1353 Gene3D Transferase(Phosphotransferase) domain 1 832 915 - -
Vian6g00175 1353 ProSitePatterns Thaumatin family signature. 182 198 IPR017949 -
Vian6g00175 1353 SUPERFAMILY Protein kinase-like (PK-like) 763 833 IPR011009 -
Vian6g00175 1353 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 291 414 - -
Vian6g00175 1353 SMART tha2 124 324 IPR001938 -
Vian6g00175 1353 Pfam D-mannose binding lectin 343 429 IPR001480 -
Vian6g00175 1353 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 836 913 - -
Vian6g00175 1353 CDD B_lectin 309 416 IPR001480 -
Vian6g00175 1353 SUPERFAMILY Osmotin, thaumatin-like protein 122 296 IPR037176 -
Vian6g00175 1353 CDD PRTases_typeI 1196 1298 IPR000836 -
Vian6g00175 1353 Gene3D - 426 551 IPR036426 -
Vian6g00175 1353 PRINTS Pathogenesis-related protein signature 168 179 IPR001938 -
Vian6g00175 1353 PRINTS Pathogenesis-related protein signature 123 135 IPR001938 -
Vian6g00175 1353 PRINTS Pathogenesis-related protein signature 221 237 IPR001938 -
Vian6g00175 1353 Gene3D - 331 425 IPR036426 -
Vian6g00175 1353 ProSiteProfiles Thaumatin family profile. 121 291 IPR001938 -
Vian6g00175 1353 SUPERFAMILY PRTase-like 1211 1352 IPR029057 -
Vian6g00175 1353 ProSiteProfiles Bulb-type lectin domain profile. 293 414 IPR001480 -
Vian6g00175 1353 SUPERFAMILY PRTase-like 1072 1189 IPR029057 -
Vian6g00175 1353 SMART blect_4 300 416 IPR001480 -
Vian6g00175 1353 Coils Coil 87 110 - -
Vian6g00175 1353 SMART Pribosyltran_N_2 1059 1161 - -
Vian6g00175 1353 Gene3D - 1201 1335 IPR029057 -
Vian6g00175 1353 Gene3D Thaumatin 122 313 IPR037176 -
Vian6g00175 1353 FunFam Ribose-phosphate pyrophosphokinase 4 1200 1335 - -
Vian6g00175 1353 Gene3D Phosphorylase Kinase; domain 1 753 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00175 Vian-Chr6 4706219 4722699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00175 822 943 Receptor kinase-like Gene Family AT5G38280 30.233 2.87e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian6g00175 Thaumatin 3.8e-52 CL0293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00175 - - gmx:100796619 1027.7