Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00174 ATGGACAAAAATTATGGGGATTCTTCATCAGCTCATGCTGCCGCAGGTTCATCTGAGACTTCCTTGCTAAATGCTCGGAAAAAAGTTGCAAGCAGTGCATGGGGAATACCTCGAGCAACTGATGTGTTCCATGATTCAAGTGATATTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCGCATGAAAAGTTAGATTTGACTGATTCTGAAAATTATGGCCAACCAGTTGATGATAACTTGCTAACATTAGAGAAAGTTCATAAAGAAGATGAGGGACGTGATCCTTTTGATGATTTTGAAGCCACTGCAATAGGGAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAGCCAACTGGAGGATTTAGATGAAAATGATCTATTTGTCAATGGAGGAGAATTTGAGATGGATTGTGAACCCCAAGAGAGCCTTAACATTGGCATGTCCAAGATAAGCATATCAGATGGAGTTGCTTCAAATGGTATAGGTCACTATGCTATCCCAAATGGTGTTGGAACTGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACACTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAACATAGAGGCTTTGTGATGATATCATACTACGACATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAACCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCAAAGGATAACCCTTCAGAAAAAGATATAAATCAAGGAACCCTTGTAGTGTTCAATTTAGACCCATCAGTCTCAAATGATGACCTTCGGCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCGCATAAGAGGCACCACAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGGAAACGCATAAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGGACTTTTAGACATCAAGTGGGTTCACCCGTGGCCAATTCTCCTCCTGGTAGCTGGGCACAATTTGGAAGTCCAGTTGAACATAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGTCCCATTAATACCACCAATCATTTGTCTGGATTGGCGGCAATTCTTTCCCCACATGCAGCAACCTCTCCCAAGATTGCGCCAATTGGCAAGGACCCTGGAAGAACTGCAAATCAGCTGTTTGCAAACTCCGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAACAAAATGCAAGTCCTAGGCCTATATCTAATTTTGGTGAATCAAATTCAGGTGCATCAAGTATTGGAACATTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCTGAGCATTCAAACACTTCATGGTCTTCATCTTCTGTGGGGCTTCCATTTACTTCTGGAATCCAAAGGCAGGGTTTTCCATATACTAGTCATCGAAGTCCTTTTCTTGGCTCCCATTCCCATCATCACGTTGGATCTGCTCCATCAGGCCTTCCACTTGATAGGCATTTTAGCTATTTTCCCGAGTCACCAGAAGCTTCTCTCATGAGCCCTGTTGCGTTTGGGAATTTAAATAAAAGTGAAGGAAATTTTATGATGAACATGGGTGGTCATGCCTCCATAGGAGCTGGTCTACCAGGAAATACTGCTGAAATTAGTTCTCCTAATTTCAGAATGATGTCGCTGCCTAGGCCTGGTTCCCTGTTTCATGGGAATAGTTCGTATACTGGACAAGGAGCAACTAACATTGATGGATTAGCCGGACGTGGACAAAGTAGACGACCTGAAAATGCTGGGAACCAAATGGACAGTAAGAAATTGTACCAGCTTGATCTAGACAAAATTCTCAGTGGTGAAGATGCAAGAACTACTTTAATGATTAAAAACATTCCTAACAAGTATACCTCAAAGATGCTGCTTGCTGCAATTGATGAGAGTCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTCAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAAGCTGCACTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGATGCCGGCCAATTCTCTTTCATTCAGAGGGCCAGGATACTAGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCAGATGGATCCTATTCAGGTGACTTGTTGGAGAGCCCGAAGGGCAATTTGGAGTTAGAGAAAGATTAA 2553 0.4242 MDKNYGDSSSAHAAAGSSETSLLNARKKVASSAWGIPRATDVFHDSSDISLFSSSLPVLPHEKLDLTDSENYGQPVDDNLLTLEKVHKEDEGRDPFDDFEATAIGNMLPDDEEELLAGIMDDFDLSKLPSQLEDLDENDLFVNGGEFEMDCEPQESLNIGMSKISISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPVANSPPGSWAQFGSPVEHNPLGSFSKSPGLGHASPINTTNHLSGLAAILSPHAATSPKIAPIGKDPGRTANQLFANSGSTQGAAFQHSMSFPEQNASPRPISNFGESNSGASSIGTLSGPQFLWGSPTPYSEHSNTSWSSSSVGLPFTSGIQRQGFPYTSHRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVAFGNLNKSEGNFMMNMGGHASIGAGLPGNTAEISSPNFRMMSLPRPGSLFHGNSSYTGQGATNIDGLAGRGQSRRPENAGNQMDSKKLYQLDLDKILSGEDARTTLMIKNIPNKYTSKMLLAAIDESHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLELEKD 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00174 850 CDD RRM1_MEI2_like 198 274 IPR034453 -
Vian6g00174 850 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Vian6g00174 850 Pfam RNA recognition motif 2 692 788 IPR007201 -
Vian6g00174 850 Gene3D - 188 282 IPR012677 -
Vian6g00174 850 SMART rrm1_1 694 770 IPR000504 GO:0003723
Vian6g00174 850 SMART rrm1_1 200 268 IPR000504 GO:0003723
Vian6g00174 850 SMART rrm1_1 285 353 IPR000504 GO:0003723
Vian6g00174 850 MobiDBLite consensus disorder prediction 1 22 - -
Vian6g00174 850 MobiDBLite consensus disorder prediction 466 499 - -
Vian6g00174 850 SUPERFAMILY RNA-binding domain, RBD 694 779 IPR035979 GO:0003676
Vian6g00174 850 Gene3D - 283 381 IPR012677 -
Vian6g00174 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Vian6g00174 850 MobiDBLite consensus disorder prediction 7 22 - -
Vian6g00174 850 MobiDBLite consensus disorder prediction 400 423 - -
Vian6g00174 850 CDD RRM2_MEI2_like 283 353 - -
Vian6g00174 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Vian6g00174 850 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Vian6g00174 850 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Vian6g00174 850 CDD RRM3_MEI2_like 695 780 IPR034454 -
Vian6g00174 850 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Vian6g00174 850 PANTHER RNA RECOGNITION MOTIF-CONTAINING 29 823 - -
Vian6g00174 850 FunFam Protein MEI2-like 1 283 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00174 Vian-Chr6 4698124 4704635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00174 194 370 Eukaryotic Initiation Factors Gene Family AT3G16380 25.758 3.16e-11 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00174 6 4698124 4704635 Vian6g00174 6 4698124 4704635 ECH