Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00167 ATGGACGGTGCGCCACCATCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGGAGGACCGGCGCCGTTTCTTCTGAAGACCTACGACATGGTTGACGATCCCTCCACCAACGACATCGTTTCGTGGAGCTCATGCAACACCAGCTTCGTCGTGTGGAATCCGCCGGAGTTCGCTCGCCTTCTTCTCCCCACCTATTTCAAGCACAACAACTTTTCCAGCTTCATCCGCCAGCTCAATACCTACGTGAGTTTCTTCGATTTCTGCTGCTGCCTCTGTTTTTCCTTCCGATTGATCATGCGCTTGCTTTTCGTTGCTGTTGGATATTTGCGCTGTGCTGAATTGGAATGTTGCTTGTTTATTGTGAATGATGATGTTGGTTTTCGAAAAATACACCCAGAGCGCTGGGAATTTGCAAATGATGAGTTTGTGAAAGATCAGAAGCATCTCCTTAAGAATATACATCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTATTGTAGATCCAGAGAGAGCAGCATTTGAGGAGGAAATTGAGAAACTTTCCCGCGAGAAAACTTCTCTTGAATCCAATATTCATAACTTCAAACAACATCAGTCAACAGCAAAGCTTCAACTAGAAGATTTTCTGCAGCGGTTAGACACTACTGAAAAGAGGCAGAAGCAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTAGTTTTGTTGAACATCTTTCACGCAAAATTGAATCCATGGATTTATCTGCGTATAATAAGAAGAGGCGATTGCCTCAAGCTGATCATGTTCAACCAGTTGCAGAAAGCAGCTTCGTGGACAGTCACAGCAATTTTAGAATGGAATTTGGAAATATTTTCCACCAGGATTTCTCGAATAAACTCAGACTGGAATTGTCACCTGCCGTGTCAGATATGAACTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAGTCCACAGAAAAAACTATCTGAAGTAGAACCAAAAGGAGTGCAGACAAGAACATCTCTTACATTTGCACCTGAAACATTAGAACTTGCGGATACGGGGGCTTCTTTTACTTTTAAGATGGATGCATGTTTGCCGCGAAAAGCAACAACTGCTGAGAACTCAAAACTGATCTCTTTGGAGCCAAGTAGTGAAGAAGGCGATAGTTGCCAGTTAAATTTAACCCTGGCATCTTGTCCAGTGCAAGTAAACAGAAATTCATACTCAGCCAGATCACCCCAAATCGACTGTCAAGAAATTGGAAAATTGGCAGAATCGAGATTTTTTGCAAGTGTAAAAGAATCTGAAAGTGGTGTTTCCTCAAACCAAAATCTAGCTGCTGAGGCCGCCAATTTAGCTTCACCACAGGAGGCTCCAAGTAACAACCAAGTTAATCCAGCTCCTCCGGACAGGGTGAATGATGTTTTCTGGGAACAGTTTCTTACCGAAAGGCCAGGCTGTTCTGACAATGAAGAGGCAATATCCAACTACCGAGCAAACCCATATGATGAGCAAGACGAAGGACGGTCAGTTCATGGAATATCTAAAAACATTAAGAACATGGATCAACTCACACTTTGA 1587 0.4405 MDGAPPSAAAAAAAAAGGPAPFLLKTYDMVDDPSTNDIVSWSSCNTSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVSFFDFCCCLCFSFRLIMRLLFVAVGYLRCAELECCLFIVNDDVGFRKIHPERWEFANDEFVKDQKHLLKNIHRRKPIHSHSHPPGSIVDPERAAFEEEIEKLSREKTSLESNIHNFKQHQSTAKLQLEDFLQRLDTTEKRQKQLLNFFEKALQNPSFVEHLSRKIESMDLSAYNKKRRLPQADHVQPVAESSFVDSHSNFRMEFGNIFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESPQKKLSEVEPKGVQTRTSLTFAPETLELADTGASFTFKMDACLPRKATTAENSKLISLEPSSEEGDSCQLNLTLASCPVQVNRNSYSARSPQIDCQEIGKLAESRFFASVKESESGVSSNQNLAAEAANLASPQEAPSNNQVNPAPPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQDEGRSVHGISKNIKNMDQLTL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00167 528 Coils Coil 173 200 - -
Vian6g00167 528 SMART hsfneu3 18 155 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian6g00167 528 MobiDBLite consensus disorder prediction 489 528 - -
Vian6g00167 528 MobiDBLite consensus disorder prediction 453 473 - -
Vian6g00167 528 Pfam HSF-type DNA-binding 22 155 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian6g00167 528 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian6g00167 528 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian6g00167 528 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian6g00167 528 SUPERFAMILY "Winged helix" DNA-binding domain 18 155 IPR036390 -
Vian6g00167 528 MobiDBLite consensus disorder prediction 311 339 - -
Vian6g00167 528 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 324 IPR027725 -
Vian6g00167 528 MobiDBLite consensus disorder prediction 453 470 - -
Vian6g00167 528 Gene3D - 16 156 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00167 Vian-Chr6 4488336 4492386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00167 1 528 HSF AT4G13980 50.743 9.15e-162 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian6g00167 HSF_DNA-bind 2e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00167 K09419 - gmx:100816484 839.721