Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00156 ATGGAAACTGAAAAATCTAACATTTCAAAGGCTGAAGAACTTAAAACCCTTGCCAATGAAGCTTTCAATGCTCGAAAATACTCCCAAGCCATTGATCTATATACTCAAGCAATTGAGCTAAACGGTGGAAATGCAGTTTACTATTCTAATCGTGCCTTTGCTCATCTTCGGCTTGAGGAATATGGTAGTGCAATACAAGATGCCTCAAAGGCTATTGAAGTTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTGCTGCTTATATTGGGCTGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAACTGAAGGAATGTGAAAAGGCAGTTATGAAGCTTAAATTTGAAGAAGCAATTGCTGCACCTGAGTCTGAAAGGCGTTCAATAGCTGAATCGATAGATTTCCATACAATAGGAAAGGGCCGCAATTCTTCGGTGCCAACCGAAGTGGCCATAGCAGCAGTGGTAGCAGTTATGGCAGCAGCGGTGATGTTGTTCAGGACATCAAAGACCACAATAGTAATTGCAATTGTGGTTGGTTTGCTGTTGCTCCTCGGGGCTTATTGGTGGAGTGGCCACAATACTGATGTCGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGAAGATTTCAAGAACCAGAAGTTCTTACATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAAATTTTGCAATCTTTGCCTTCTCTTGTTGACATACATGTTCCTAATGGCAAACGTTTTACTGTTTGTGGTGATGTGCATGGTCAGTTCTATGATCTTTTGAATATTTTTGAGCTTAATGGACTTCCTTCAGAAGAGAATCCGTATCTATTTAACGGTGACTTTGTGGATAGGGGATCTTTTTCATTGGAAGTTATCCTGACCTTGTTTGCATTTAAGTGCCTGTCTCCATCAGCCATATATTTAGCCAGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAATGATACTTTTGTCGAACTCTTTGCGGAAGTATTCTGCTTTTTACCACTGGCTCATGTGATAAATGAGAAAGTTTTCGTAGTTCATGGAGGTCTTTTCAGTGTTGACGGGGTCAAACTCTCTGACATCCGATCAATTAATCGATTCTGTGAACCTCCTGAAGAAGGGCTGATGTGTGAAATTCTTTGGAGTGATCCACAACCTCTCCCTGGAAGGGGCCCAAGCAAGCGTGGTGTGGGTCTTTCTTTTGGTCCAGATGTTACAGAACAGTTTTTGCAGGAAAATAATTTAGATTTAGTTGTGAGATCTCATGAAGTAAAGGATGAGGGTTACGAGATTGAACATGATGGTAAACTCATAACTGTCTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCACCAGATTTGAAACCTAACATTGTCACATTCTCAGCAGTGTCACACCCTGATGTCAAACCAATGGCTTATGCAAACAACTTCCTCAGGATGTTCTCATAA 1620 0.4074 METEKSNISKAEELKTLANEAFNARKYSQAIDLYTQAIELNGGNAVYYSNRAFAHLRLEEYGSAIQDASKAIEVDPKYSKGYYRRGAAYIGLGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAAPESERRSIAESIDFHTIGKGRNSSVPTEVAIAAVVAVMAAAVMLFRTSKTTIVIAIVVGLLLLLGAYWWSGHNTDVEPQYSGARIEGDVVTLDFVKKMMEDFKNQKFLHKRYAFQIVLQTREILQSLPSLVDIHVPNGKRFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCLSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNDTFVELFAEVFCFLPLAHVINEKVFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCEILWSDPQPLPGRGPSKRGVGLSFGPDVTEQFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVSHPDVKPMAYANNFLRMFS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00156 539 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Vian6g00156 539 SMART pp2a_7 245 521 IPR006186 GO:0016787
Vian6g00156 539 Pfam Tetratricopeptide repeat 17 78 - -
Vian6g00156 539 CDD MPP_PP5_C 217 532 IPR041753 -
Vian6g00156 539 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 44 532 - -
Vian6g00156 539 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vian6g00156 539 PIRSF PPPtase_5 1 539 - -
Vian6g00156 539 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Vian6g00156 539 SUPERFAMILY TPR-like 7 137 IPR011990 GO:0005515
Vian6g00156 539 Pfam Calcineurin-like phosphoesterase 277 471 IPR004843 GO:0016787
Vian6g00156 539 SUPERFAMILY Metallo-dependent phosphatases 226 533 IPR029052 -
Vian6g00156 539 PRINTS Serine/threonine phosphatase family signature 307 334 IPR006186 GO:0016787
Vian6g00156 539 PRINTS Serine/threonine phosphatase family signature 374 400 IPR006186 GO:0016787
Vian6g00156 539 PRINTS Serine/threonine phosphatase family signature 340 364 IPR006186 GO:0016787
Vian6g00156 539 PRINTS Serine/threonine phosphatase family signature 404 431 IPR006186 GO:0016787
Vian6g00156 539 PRINTS Serine/threonine phosphatase family signature 460 480 IPR006186 GO:0016787
Vian6g00156 539 PRINTS Serine/threonine phosphatase family signature 277 304 IPR006186 GO:0016787
Vian6g00156 539 PRINTS Serine/threonine phosphatase family signature 482 498 IPR006186 GO:0016787
Vian6g00156 539 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Vian6g00156 539 Gene3D - 205 538 IPR029052 -
Vian6g00156 539 SMART tpr_5 45 78 IPR019734 GO:0005515
Vian6g00156 539 SMART tpr_5 79 112 IPR019734 GO:0005515
Vian6g00156 539 SMART tpr_5 11 44 IPR019734 GO:0005515
Vian6g00156 539 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Vian6g00156 539 Gene3D Tetratricopeptide repeat domain 2 158 IPR011990 GO:0005515
Vian6g00156 539 FunFam Serine/threonine-protein phosphatase 5 202 538 - -
Vian6g00156 539 Pfam PPP5 TPR repeat region 210 269 IPR013235 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00156 Vian-Chr6 4142148 4152415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00156 223 461 Calmodulin-binding Proteins AT5G63870 34.507 4.74e-41 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00156 K04460 - gmx:100820099 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00156 6 4142148 4152415 Vian6g00156 6 4142148 4152415 ECH