Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00144 ATGGTAGCCATTGTTGCTTCTTACAGTGTCTTTCCGAGTAAAGAAACTCCCAAAGTTCAATTATGGTTATCAGATAGTGACCAAGTCGTGCGTTCAGGTCACACACCCACTATCTATGTATACCAAGCAAAACACGATGATGGCACCACCCAGAGGTTGATAAACTCTCTTGCTCAGATTTTAGTGCCCTACTACCCACTTGCTGGCAGGTTGAGCTTAGCAGAAACTGGTCGAATTCAAGTGGATTGCAATGCCAAAGGAGTCACTTTTATTGAAGCCGAAACCACAAAATCATTGGCTGATTATGGAGACTTTTCACCTTCTGATTCTGTCAGGGAGCTTGTTCCAAAGATTGATTACACTCGACCCGTAAAGGAAATTCCTTTGTTGCTTGTGCAATCCACAAGATTCCATGGTGGTGAAGGTTTTGTCATTGGAGTGGCTTTCTGTCACCCTTTGGCTGATGGGTTTGGTGGCATTCAGTTCATCAATTCCTGGGCAAAACTGGCTCGCGGAGAGACACTTGAGCCACATGAATTGCCCTACCTTGATAGAACAATACTCAAACTCCAACACTCATCAACATCACCGTGCTTTCATCACCCCGAGTTGAAGCCTCTACCACTAAAACTAGGAAGCTCTGACATCAACGCTGAGGAAAGCAAGAAGACAAGGGCTGTGCTACTGAAACTGACGCAAGAACAGGTGCAGAAGCTGAAGAATGAGGCGAACGAAGAACCCTTGCAAGAAGGGGTGAGAGCTTATAGCAGATTTGAAGCTATTTCCGGTCATATATGGAGATGTGCAAGCAAGGCTCGTGAACTTGAAGAGAAGCAAGAAACGGTGGTTCGGTTCAATGCTGATATCCGTAGCAGACTGATTCCTCCTCTTCCTAGGAATTACTTTGGGAATGCTTTGGCAGCAACAGTGTCACCGAAATGCTATGTTGGAGAAATAGTGTCAAAGCCTTTGAGGTATGCTGCAGAAAAGGTAAGAGAAGCGATTGAAAAGCTTAGTAATGAGTACATAAGGTCACAACTGAGGATTGTGTTAGGAGAGGAGCAATTGGATTGCATAAGGGGTTTGTTCTTGGGAGAAGGAGAGCGTAGAAATGTTCCTTTTGCAGGGAATCCGAATCTTCAAATCACAAGCTGGATGAGCATGCCAGTGTATGGAGCAGATTTTGGATTGGGAAAGCCTGTGTTTTTCGGATTGGCATATGTTGCTCCGCAAGATAGGGCTGTGATTCTTCTGAGTCCAGATGGTGATGGATCCATTATTGTCTCCATGCACTTCCAAGAATCACATTTGGAGCTTTTCAAGAAATTGTTCTACCAGAGTTTGTGA 1347 0.4462 MVAIVASYSVFPSKETPKVQLWLSDSDQVVRSGHTPTIYVYQAKHDDGTTQRLINSLAQILVPYYPLAGRLSLAETGRIQVDCNAKGVTFIEAETTKSLADYGDFSPSDSVRELVPKIDYTRPVKEIPLLLVQSTRFHGGEGFVIGVAFCHPLADGFGGIQFINSWAKLARGETLEPHELPYLDRTILKLQHSSTSPCFHHPELKPLPLKLGSSDINAEESKKTRAVLLKLTQEQVQKLKNEANEEPLQEGVRAYSRFEAISGHIWRCASKARELEEKQETVVRFNADIRSRLIPPLPRNYFGNALAATVSPKCYVGEIVSKPLRYAAEKVREAIEKLSNEYIRSQLRIVLGEEQLDCIRGLFLGEGERRNVPFAGNPNLQITSWMSMPVYGADFGLGKPVFFGLAYVAPQDRAVILLSPDGDGSIIVSMHFQESHLELFKKLFYQSL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00144 448 Pfam Transferase family 1 445 - -
Vian6g00144 448 Coils Coil 328 348 - -
Vian6g00144 448 Gene3D - 213 447 IPR023213 -
Vian6g00144 448 Gene3D - 1 206 IPR023213 -
Vian6g00144 448 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00144 Vian-Chr6 3765815 3767161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00144 2 446 Monolignol Biosynthesis Gene Families AT5G48930 37.136 4.62e-100 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00144 K13065 - gmx:100779814 686.026