Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00143 ATGGTCAGTGACACGAGCTCTAGGCTGTCTCCTTGCTCTCTTCTGCATAGGACGCAGGAGGCATCGGAAGCGGCGGCACAGGAGGCGCAGGAGGAGGAGGAGCAGGTGTCGGTGATGATGTCGTTGATGGACTTGTTAGAGGAGACTGATAGGGAAATGGGCCTTGAAGGATCAAGGTATATATTGAGTGATGATGAGGATTTTGATGAGGATGCAGATGATGATGGTGGTGAAGATGGAGATGGAGGGGGTTCCATGGAGCACACTTGCTGTATTTGCATGGTCACGCATAAGACTGCTTCTTTTATACCATGTGGCCACACTTTCTGCAAGATGTGTTCAAGGGAGCTTATGGTTAGTACGAGGAATTGCCCACTCTGCAACATTTTCATTTTGGAGATTCTTGAAATTTTTTGA 417 0.4796 MVSDTSSRLSPCSLLHRTQEASEAAAQEAQEEEEQVSVMMSLMDLLEETDREMGLEGSRYILSDDEDFDEDADDDGGEDGDGGGSMEHTCCICMVTHKTASFIPCGHTFCKMCSRELMVSTRNCPLCNIFILEILEIF 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00143 138 SUPERFAMILY RING/U-box 89 134 - -
Vian6g00143 138 ProSiteProfiles Zinc finger RING-type profile. 90 128 IPR001841 -
Vian6g00143 138 MobiDBLite consensus disorder prediction 1 17 - -
Vian6g00143 138 Pfam Zinc finger, C3HC4 type (RING finger) 87 131 - -
Vian6g00143 138 Coils Coil 15 35 - -
Vian6g00143 138 SMART ring_2 90 127 IPR001841 -
Vian6g00143 138 MobiDBLite consensus disorder prediction 59 83 - -
Vian6g00143 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 138 IPR013083 -
Vian6g00143 138 PANTHER OS01G0917900 PROTEIN 19 138 - -
Vian6g00143 138 MobiDBLite consensus disorder prediction 1 35 - -
Vian6g00143 138 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00143 Vian-Chr6 3740809 3741701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00143 40 138 C3H Transcription Factor Family AT3G07120 60.784 5.55e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00143 - - var:108341256 190.274