Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00106 ATGGATATGCAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTCTTGACACGTGTTCATCATTTAAACCTGGTGCGGCTGATTGGGTATAGCATCGAGGGATCTCTTTTTCTTGTCTATGAATACATTGAAAATGGAAACCTAAGTCAACATCTGCGTGGTTCAGGTAGTAGAGAACCACTGCCATGGGCTACTCGTGTTCAGATTGCTCTGGATTCTGCCAGAGGTCTTGAATATATTCACGAGCACACAGTGCCTGTATATATTCATCGTGACATAAAGTCAGCAAATATATTAATAGACAAAAACTTCCGGGGCAAGGTTGCTGATTTTGGATTAACCAAACTTACAGAAGTTGGAAGTTCATCACTTCCCACGGGTCGTCTTGTTGGAACATTTGGATACATGCCACCGGAGTATGCTCAATATGGGGATGTTTCTCCCAAAGTAGACGTGTATGCTTTTGGAGTTGTTCTTTATGAACTCATTTCGGCTAAGGAAGCAATTGTCAAGACAAACGACTCCGTTACCGACTCAAAGGGCCTAGTAGCTCTGTTTGAGGGGGTTCTTGGTCAGCCGGATAACACTGAAGATCTCTGCAAACTAGTTGATCCAAGGCTTGGGGATAACTACCCAGTTGACTCTGTCCGCAAGATGGCACAACTAGCCAAAGCCTGTACACAAGACAATCCTCAACTCCGTCCAAGTATGAGATCTATTGTGGTTGCGCTGATGACACTTTCTTCAACTACAGACGAGTGGGATGTTGGTTCCTTCTATGAAAATCAAAATCTTGTGAATCTAATGTCAGGAAGATAG 819 0.4298 MDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEYIENGNLSQHLRGSGSREPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTNDSVTDSKGLVALFEGVLGQPDNTEDLCKLVDPRLGDNYPVDSVRKMAQLAKACTQDNPQLRPSMRSIVVALMTLSSTTDEWDVGSFYENQNLVNLMSGR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00106 272 PIRSF ILK 1 260 - -
Vian6g00106 272 Gene3D Phosphorylase Kinase; domain 1 1 43 - -
Vian6g00106 272 Gene3D Transferase(Phosphotransferase) domain 1 44 264 - -
Vian6g00106 272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 88 100 IPR008271 GO:0004672|GO:0006468
Vian6g00106 272 SUPERFAMILY Protein kinase-like (PK-like) 3 251 IPR011009 -
Vian6g00106 272 Pfam Protein tyrosine and serine/threonine kinase 4 243 IPR001245 GO:0004672|GO:0006468
Vian6g00106 272 ProSiteProfiles Protein kinase domain profile. 1 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00106 272 SMART serkin_6 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00106 272 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 1 258 IPR044812 GO:0019199|GO:0045087
Vian6g00106 272 FunFam PTI1-like tyrosine-protein kinase 3 43 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00106 Vian-Chr6 3034866 3038681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00106 1 272 Receptor kinase-like Gene Family AT3G21630 73.529 2.56e-138 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vian6g00106 PK_Tyr_Ser-Thr 1.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00106 - K13429 gmx:100777781 528.48