Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00100 ATGGCCCACAGGCGTTGCCTCTTGATAAGAGGGAACCTCATGAATCAAAAGTGCCACCCGTCTTTCAGTTATGTTCTCCACAGTGATGAAGGGAAACATGAAAGCACTGGCGAAAGGTCATCTTCAGCAGGGATTAGTAATTTTTTCCAAAGAAGGATGTTTGGGAACTCAGTGGATGGATCAATGTGGTGTTTTGCCTATTCTGAACATAGAATGTCTTCAAACAGATTCCTTTCTCCGAGCTCTGGGTATAATTTATATCGACATATGTCAACAACTAATCAGGGTTCCGATAAGATTGAAATAATGACTGACATAGCAGATGTTCTAAAAAACAATACGATGGAAGCTGTGAATTCTCAGGCTCCTATTCTTAAAGAAGTTGCAATTGCCTCTGCTGATTCTGTTTTACCTGTGAAGGCCTTGCAGTACATTATAGATGCCATGCATTCCTACACTGGATTGAACTGGTGGGCAGCCATAGTTATAACAACTCTCTTGATTCGAAGCGCAACAGTTCCACTCTTAATAAATCAACTTAAGGCCACTTCTAAGCTTACGCTGATGAGGCCTCACATGGAAAAAATAAAGGAAGAGATGGAAGATAAGGCTATGGATCCCATTGCTGTTGCTGAAGGTCAGAAAAAAATGAAGATGCTATTTAAGGAATATGGTGCAAGTCCATTTACTCCATTGAAGGGGCTCTTTATTCAAGGTCCTGTCTTTATTAGTTTCTTCCTTGCGATAAGAAACATGGCTGAAAAGATGCCATCATTCAAGGATGGCGGAGCCTACTGGTTTGTTGATCTTACCACTCCAGATGCATTGTACATTTTGCCAGTTCTGACTGCATTGACGTTCTTAATAACAGTAGAGTGCAACATGCAAGAAGGCATGGAAGGAAATCCAGCTGCTGGCACCATGAAAAAAGTCTCGAGGGTTCTTGCTGTCCTTACAGTTCCTTTTACCATGGGATTTCCGAAGGCTATATTTTGTTACTGGATTACATCAAATTTGTTTTCACTTGGATATGGACTCGTTCTTAAAGCTCCTGGTGTAAAGAAAGCTTTGGGTATCCCCATAATACCGGAAGCAGCAGCCACCAGTGGTGCACAATCTCCCTCTTCTATATTTCCAGCCCTGAAACAAGCTACAGCAGCAAGAATAGCACCAAAGTCATTGCCTGTTGAACCATCAAAACATATTACAAAGACATCTTCTGATGTCAATCAGAGACTAAATCGTTTAGAGAAACAAGTGAAAAGAAGAAAGAAAAACAAGAAATGA 1287 0.4095 MAHRRCLLIRGNLMNQKCHPSFSYVLHSDEGKHESTGERSSSAGISNFFQRRMFGNSVDGSMWCFAYSEHRMSSNRFLSPSSGYNLYRHMSTTNQGSDKIEIMTDIADVLKNNTMEAVNSQAPILKEVAIASADSVLPVKALQYIIDAMHSYTGLNWWAAIVITTLLIRSATVPLLINQLKATSKLTLMRPHMEKIKEEMEDKAMDPIAVAEGQKKMKMLFKEYGASPFTPLKGLFIQGPVFISFFLAIRNMAEKMPSFKDGGAYWFVDLTTPDALYILPVLTALTFLITVECNMQEGMEGNPAAGTMKKVSRVLAVLTVPFTMGFPKAIFCYWITSNLFSLGYGLVLKAPGVKKALGIPIIPEAAATSGAQSPSSIFPALKQATAARIAPKSLPVEPSKHITKTSSDVNQRLNRLEKQVKRRKKNKK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00100 428 Coils Coil 406 428 - -
Vian6g00100 428 Pfam 60Kd inner membrane protein 157 347 IPR028055 -
Vian6g00100 428 MobiDBLite consensus disorder prediction 399 413 - -
Vian6g00100 428 PANTHER OXA1 114 403 IPR001708 GO:0016020|GO:0032977
Vian6g00100 428 CDD 5TM_Oxa1-like 154 351 - -
Vian6g00100 428 NCBIfam membrane protein insertase YidC 156 345 IPR028055 -
Vian6g00100 428 MobiDBLite consensus disorder prediction 392 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00100 Vian-Chr6 2871576 2878141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00100 160 427 Chloroplast and Mitochondria Gene Families AT2G28800 23.741 1.36e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00100 K03217 - gmx:100787806 701.819