Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00096 ATGGGCAACTGTTGCTCTGGCAACGCTGCCGATGGCCCGGCTGACATGGCCGCCGCAGATGACAAGGGAGAAACCAACCAACAAAGCATTCGTTCAGACAGCAACAATAATAATGCCGTTGATAACCCTGCCACCACCACTACCACCCCACCGACATCGGCGGCGCCACCTACCGTGACGTCACCTCCTTCGAAATCCTCAAAACCGGGCGCCATGGGCCCTGTCTTGGAGAGGCCGATGGAGGACGGCCATTACACTGAACGTGCTGCAGCTTCTTTGCTCAGAACCATTGTGCAGATTGTTCACACCTTCCATTCCATGGGTGTCATTCACAGAGATCTTAAGCCTGAAAATTTCCTCTTGCTCAGCAAGGATGAAAATGCACCCCTCAAGGCCACCGATTTTGGTCTTTCCGTTTTCTTCAAAGAAGGAGAACAGTTCAAAGACATTGTGGGAAGTGCATATTACATTGCTCCTGAGGTTTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATCCTTCTATGTGGTGTTCCTCCATTTTGGGCAGAATCGGAACATGGTATATTCAATGCCATCCTAAGAGGCCACGTTGATTTTACAAGCGATCCATGGCCTTCAATTTCACCTTCAGCAAAGGATCTTGTAAGTCACATGTTGAATTCAGATCCCAAAGAAAGATTTACAGCAGCTCAAGTTTTAGATCATCCATGGATCAAGGAGGATGGAGAAGCACCTGATAAACCACTTGACAATGCTGTACTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGGTGTCTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAGGGGCATGGACACTGACAACAGTGGAACCATCACAATTGAAGAGCTCAAACAAGGGCTTGCAAAGCAAGGAACAAAGCTTACAGAACAAGAAGTTAAGCAGTTGATGGAAGCTGCTGATGCTGATGGCAATGGAACCATTGATTACGACGAGTTCATAACGGCAACGATGCAGATGAACCGAATGAACAGAGAAGAACATCTTTACACAGCTTTCCAATACTTCGATAAAGATAATAGCGGGTTCATTACCACTGAAGAACTAGAACAAGCTCTCCGTGAGTTTAACATGCACGATGGCAGGGACATCAAGGAAATCCTTCTAGAAGTTGATGGAGATAATGATGGGCGAATTAACTATGATGAGTTTGTGGCAATGATGAGAAAAGGAAATACAGAAGCTGCAACGAGGAAGAGGCGTCCCATAGTGGAGTGA 1332 0.4595 MGNCCSGNAADGPADMAAADDKGETNQQSIRSDSNNNNAVDNPATTTTTPPTSAAPPTVTSPPSKSSKPGAMGPVLERPMEDGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLSKDENAPLKATDFGLSVFFKEGEQFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHVDFTSDPWPSISPSAKDLVSHMLNSDPKERFTAAQVLDHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREFNMHDGRDIKEILLEVDGDNDGRINYDEFVAMMRKGNTEAATRKRRPIVE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00096 443 SMART efh_1 294 322 IPR002048 GO:0005509
Vian6g00096 443 SMART efh_1 366 394 IPR002048 GO:0005509
Vian6g00096 443 SMART efh_1 401 429 IPR002048 GO:0005509
Vian6g00096 443 SMART efh_1 330 358 IPR002048 GO:0005509
Vian6g00096 443 SMART serkin_6 1 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00096 443 MobiDBLite consensus disorder prediction 1 78 - -
Vian6g00096 443 ProSitePatterns EF-hand calcium-binding domain. 303 315 IPR018247 -
Vian6g00096 443 ProSiteProfiles EF-hand calcium-binding domain profile. 326 361 IPR002048 GO:0005509
Vian6g00096 443 Pfam Protein kinase domain 81 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00096 443 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Vian6g00096 443 Gene3D Transferase(Phosphotransferase) domain 1 72 254 - -
Vian6g00096 443 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Vian6g00096 443 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Vian6g00096 443 FunFam calcium-dependent protein kinase 1 75 254 - -
Vian6g00096 443 ProSiteProfiles EF-hand calcium-binding domain profile. 290 325 IPR002048 GO:0005509
Vian6g00096 443 FunFam Calcium-dependent protein kinase 1 255 430 - -
Vian6g00096 443 SUPERFAMILY Protein kinase-like (PK-like) 81 275 IPR011009 -
Vian6g00096 443 ProSiteProfiles EF-hand calcium-binding domain profile. 401 432 IPR002048 GO:0005509
Vian6g00096 443 ProSiteProfiles Protein kinase domain profile. 1 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00096 443 MobiDBLite consensus disorder prediction 22 67 - -
Vian6g00096 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 109 121 IPR008271 GO:0004672|GO:0006468
Vian6g00096 443 PANTHER SERINE/THREONINE-PROTEIN KINASE 74 422 - -
Vian6g00096 443 Pfam EF-hand domain pair 295 355 IPR002048 GO:0005509
Vian6g00096 443 Pfam EF-hand domain pair 364 427 IPR002048 GO:0005509
Vian6g00096 443 ProSitePatterns EF-hand calcium-binding domain. 339 351 IPR018247 -
Vian6g00096 443 SUPERFAMILY EF-hand 287 428 IPR011992 -
Vian6g00096 443 Gene3D - 255 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00096 Vian-Chr6 2674321 2677332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00096 71 441 EF-hand Containing Proteins AT5G12180 83.558 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian6g00096 Pkinase 5.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00096 K13412 - gmx:100781355 677.937