Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00084 ATGACCAACAATCCAACGCCAATCGCTACCAAAGACTCCGTCTCCGAGGACCACCACATTGGATCCTCCTCCCAACGCACTCCACCACCGCCGCTACCACCATCGCCACCACCACCAACCACCTCCACCAATCAACATGTCACGAACCCATCTTCAAGTAAGCCACGTGGCAGACCCCTAGGTTCCAAGAACAAGTCAAAGCCCATCCCTCTGCCAGTGCCCCTACCAACTGAGCCCTCCGTAGCGGTTCTGGTTGTCACTGTGGATCCAAACAGGGACATCATGGAGTGCATCCTTGACATTGCTCACCAAGACCACGTGAGCCTCTCCATCGTTAGTGCCATCGGCATGATCAATAGCGTAACCCTTCGCAACTCAACCCATGGCGCCCCATCCCTCGTGCTCCATGGGCCATTCAAATTACTCTCCCTCACTGGCTCCTACTTATACAGAAACGAATACACCCTTCACCTTGGAGCCACTCCTCCCCGTCCCTTATCCTTTGGAATCAACTTCTCCGCCGCTAACGGCGAAATCTTTACCGGCATTATCGGCGGCAGCGTCGTCGCAGGCGAGGGCGTCAGCTTGACAGTTTCCACCTTCAAGAATCCTGATATTTTAAAGTACGCTGCTGAAAGAGAAGAAGGGGATGACAATAACAGCGACAATGATAACACCAACCCTAATGATCTTACAGAGGGTGGCGACGACCTACGTTCAATATAA 726 0.5289 MTNNPTPIATKDSVSEDHHIGSSSQRTPPPPLPPSPPPPTTSTNQHVTNPSSSKPRGRPLGSKNKSKPIPLPVPLPTEPSVAVLVVTVDPNRDIMECILDIAHQDHVSLSIVSAIGMINSVTLRNSTHGAPSLVLHGPFKLLSLTGSYLYRNEYTLHLGATPPRPLSFGINFSAANGEIFTGIIGGSVVAGEGVSLTVSTFKNPDILKYAAEREEGDDNNSDNDNTNPNDLTEGGDDLRSI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00084 241 MobiDBLite consensus disorder prediction 1 74 - -
Vian6g00084 241 FunFam AT-hook motif nuclear-localized protein 17 80 217 - -
Vian6g00084 241 CDD DUF296 83 191 IPR005175 -
Vian6g00084 241 MobiDBLite consensus disorder prediction 26 43 - -
Vian6g00084 241 Gene3D - 81 219 - -
Vian6g00084 241 MobiDBLite consensus disorder prediction 44 59 - -
Vian6g00084 241 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 202 IPR005175 -
Vian6g00084 241 MobiDBLite consensus disorder prediction 212 241 - -
Vian6g00084 241 ProSiteProfiles PPC domain profile profile. 78 224 IPR005175 -
Vian6g00084 241 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 207 - -
Vian6g00084 241 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 223 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00084 Vian-Chr6 2404801 2405526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00084 54 237 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 27.419 7.53e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00084 - - vra:106779930 388.652