Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00061 ATGGGTTATATATGTGATTTTTGTGGAGACCAGAGGTCCATGGTGTACTGCCGTTCTGATGCTGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCCAGGCGTCATTCACGCACCCTTTTGTGTGAGAGATGCAATTCACAACCTGCCTTTGTGAGATGTGTTGAAGAGAAAATTTCTCTGTGTCAGAATTGTGATTGGTTGGGTCATGGAGTCTCTACATCTTCGACACATAAGAGACAAGGAATCAGTTGCTACTCTGGCTGCCCTTCAGCCGCGGAACTGTCTTCAATATGGTCATTTGTCTTGGATATCCCTTCCATTAGGGAGTCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAGCGAGAGTGTTGGAGTTCCACCTGAAAACGGGAATGTGTCTGTTTCAGATCAAGTTACTGATCTACCTGCTTTGGACAGGTCTTTCGTTGGTACATCTTCAATACCCGAGTCAAGCTCCGAAACTCGGATTCTGGACCAGCCAGATGGACCTGCCAATGAATGTCTGCCAAAGTTGTACTGTCCTGCTACAAAATGCCCTGCATTATGTGAAGATGACAATCTATATGATGATTTTGACATGGATGAAGTGGATCTAAATCTTGAGAACTATGAAGAACTTTTTGGTATGGCCCTCAGTCATTCCGAAGAGCTATTTGAAAACGGTGGAATTGATAGTTTATTTGGGACAAAGGACATGTCTGCCGGAGATTCCAGTTGTCAGGATGCTATTGCTGCCGAGGGGTCATCGGTTGGACTGGTCAATGCAACACAACCAGCTTGCAGCAACGCAGCATCTGCAGATTCCATTTTGAGTACTAAAACCGAACCGATTCTTTGTTTCACGGGGAGGCAAGCACAATCAAACCTTTCTTTTTCTGGCATTACCGGAGAAAGTAGTGCTGCAGACTATCAAGACTGTGGGACTACTTCCATGCTTCTCATGGGAGAACCTCCTTGGTTTGCTCCTTGTCCTGAGAATTCCTTACAATCTGCCAACCGCAGCAATGCTGTCTTGCGTTACAAGGAAAAGAAGAAGGCACGAAAGTTTGAAAAACAAGTGCGGTATGCCTCTCGCAAGGCAAGGGCCGACATAAGAAGGCGTGTGAAGGGCCGGTTTGTGAAAGCCGGCGACGTGTACGACTATGACCCTTTGAGCACAACCAGAAGCTGCTGA 1230 0.4577 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGVSTSSTHKRQGISCYSGCPSAAELSSIWSFVLDIPSIRESTCEQELGLMSINENSESVGVPPENGNVSVSDQVTDLPALDRSFVGTSSIPESSSETRILDQPDGPANECLPKLYCPATKCPALCEDDNLYDDFDMDEVDLNLENYEELFGMALSHSEELFENGGIDSLFGTKDMSAGDSSCQDAIAAEGSSVGLVNATQPACSNAASADSILSTKTEPILCFTGRQAQSNLSFSGITGESSAADYQDCGTTSMLLMGEPPWFAPCPENSLQSANRSNAVLRYKEKKKARKFEKQVRYASRKARADIRRRVKGRFVKAGDVYDYDPLSTTRSC 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00061 409 CDD Bbox1_BBX-like 47 89 - -
Vian6g00061 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vian6g00061 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 396 - -
Vian6g00061 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Vian6g00061 409 Pfam CCT motif 352 394 IPR010402 GO:0005515
Vian6g00061 409 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Vian6g00061 409 CDD Bbox1_BBX-like 4 47 - -
Vian6g00061 409 SMART bboxneu5 48 89 IPR000315 GO:0008270
Vian6g00061 409 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00061 Vian-Chr6 1989413 1993801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00061 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.924 2.29e-154 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vian6g00061 CCT 2.4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00061 - - pvu:PHAVU_006G005200g 768.459