Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00060 ATGGAAATCGAGAGATACACCAGCCAACGGTGGCGTCCAACAGATGATCAGGTCAAGATGATGACCAACATCTTCAACTATGGGGTCACTCATCCAAGCCGAGCGCAAGTCGTCGAGATCACGTCTCGACTAAGGACCTACGGAGATGCCAGCGAATACAACGTGCACTGCTGGTTCAACAATCACGGCAACCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCCACTGGCACTCAGTTTTCACAACTGCCGCTATACATGTACAAAAATGGCTGGGTGGTAATGAGGGCACCGAGGCTGTTGGACCTCTTCCCCATTCCTATCATAATCGATCCAGAAACAGAGATTCCTCCGCCTCCGCTCGTGACTTTTCGTACCAGAGCTCCCTCAACGGAGCTCTCCCTTAGACCACCACAACCAGCTCGAGAGTTCTTTCGATTTTAA 444 0.5225 MEIERYTSQRWRPTDDQVKMMTNIFNYGVTHPSRAQVVEITSRLRTYGDASEYNVHCWFNNHGNRVRRWQAEIDPTGTQFSQLPLYMYKNGWVVMRAPRLLDLFPIPIIIDPETEIPPPPLVTFRTRAPSTELSLRPPQPAREFFRF 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00060 147 ProSiteProfiles 'Homeobox' domain profile. 4 69 IPR001356 GO:0003677
Vian6g00060 147 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vian6g00060 147 Gene3D - 8 73 - -
Vian6g00060 147 PANTHER WUSCHEL-RELATED HOMEOBOX 13 7 72 IPR044559 GO:0003700
Vian6g00060 147 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00060 Vian-Chr6 1971573 1972111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00060 7 72 Wox Gene Family AT5G59340 42.424 2.92e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian6g00060 Homeodomain 4.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00060 - K24144 vum:124821070 237.654