Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00057 ATGGCTACTATGCTTAATGGAGCAGCAATCATGGATGGAGCTTTACTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAAACCTCTGAGCACTTAGCTGCTGTGGAAATTATGCGTCTACAGCATATAATAATCCTTCAGAACAAGGTTGACTTGATTCAGGAAAATGTGGCAATCAATCAGCATGAAGCAATTTCAAAGTTTATACAGGGAACCGTTGCTGATGGTGCACCAGTAGTACCCATTTCAGCACAGTTAAAGTATAATATTGATGTTGTGTGTGAGTATATTGTGAAGAAGATCCCAATCCCTGAGAGGAACTTTGTTTCTCCACCCAATATGATCGTGATCCGGTCGTTTGATGTCAATAAACCTGGTTTTGAGGTTGATGAAATAAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTGAATCAATTCATTGAAGTTCGACCTGGGATTGTGGTGAAAGATGAGAGTGGCAATATCCGATGCACACCAATATACTCAAGAATAGTTTCATTGTATGCTGAACAAAATGAGCTTCAATTTGCTGTACCTGGAGGCCTAATTGGTGTTGGGACAACGATGGATCCCACACTGACACGAGCTGATAGGCTGGTAGGTCAAGTTCTTGGAGAGGTTGGATCCCTACCTGAGGTTTTTGTTGAACTCGAGGTAAACTTTTTCCTTCTTAGACGGCTTCTTGGCGTCCGAACAAAAGGGTCTGAGAGACAGGGGAAGGTATCGAAACTGGCGAAAGCAGAGATGCTAATGTTGAACATAGGATCAATGTCAACGGGGGCTAGAGTAATTGCTGTGAAGAATGACTTGGCGAAGTTGCAACTTACATCCCCTGTGTGCACTAGCAAGGGTGAGAAGATAGCACTTAGTCGACGTGTTGAGAAGCATTGGCGTCTTATTGGATGGGGGCAAATCCAAGCAGGAATCACCCTTGACGTCCCACCTGCCCCCCATCTCAGTTGA 1002 0.4451 MATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAISKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKAEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPHLS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00057 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 105 IPR027417 -
Vian6g00057 333 Pfam Elongation factor Tu domain 2 135 217 IPR004161 GO:0005525
Vian6g00057 333 Gene3D Translation factors 224 322 - -
Vian6g00057 333 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 106 IPR000795 GO:0003924|GO:0005525
Vian6g00057 333 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 326 - -
Vian6g00057 333 Pfam Initiation factor eIF2 gamma, C terminal 229 318 IPR015256 -
Vian6g00057 333 CDD eIF2_gamma_III 224 318 IPR015256 -
Vian6g00057 333 FunFam Eukaryotic translation initiation factor 2 subunit gamma 224 323 - -
Vian6g00057 333 Gene3D Translation factors 109 223 - -
Vian6g00057 333 Pfam Elongation factor Tu GTP binding domain 3 103 IPR000795 GO:0003924|GO:0005525
Vian6g00057 333 FunFam Eukaryotic translation initiation factor 2 subunit gamma 108 223 - -
Vian6g00057 333 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 222 319 IPR009001 -
Vian6g00057 333 Gene3D - 1 107 IPR027417 -
Vian6g00057 333 CDD eIF2_gamma_II 108 221 IPR044127 GO:0000049
Vian6g00057 333 SUPERFAMILY Translation proteins 107 221 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00057 Vian-Chr6 1922108 1923578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00057 1 330 Eukaryotic Initiation Factors Gene Family AT1G04170 89.394 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00057 K03242 - gmx:100805852 645.58