Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00056 ATGACTTCCAGAAAATCCGACAACCCCCACTCTGGCGACGGCGCAAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGAAACCACCCTAGAAACGTTTGTGAATTACTTCGAAAAGTATGGCGAGATAACGGACTCCGTTATCATGAAGGACCGTCAAACGGGTCGACCCAGGGGGTTCGGGTTCATCACCTATGCGGATCCCTCCGTCGTTGACCAAGTCATTCAGGAGAACCACATCATCAGCGGCAAGCAGGTTGAAATCAAGAGGACCATTCCCAAGGGTTCGTCGCAGGCTAATGACTTCAAAACCAAGAAAATCTTCGTCGGCGGTATTCCAACATCAGTATCTGAAGATGAGTTCAAGAACTTCTTCTCCAAGTATGGGAAGGTGGTAGAGCATGAGATTATACGGGACCACACCACAAAGCGATCAAGGGGGTTCGGCTTTATAGTATTTGATAGTGAAAAGGTTGTGGATAATATTTTGGCAGATGGGAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTGCTCCGTTTGCTAGTGACTCTAGGGCACGTTCTTACAATGATGGATTCAGTGGATTTGGTGATTCTTATGGAAGTTTTGGCGGAAGTGGGTATGGTCCTGGTTCTTATAGGTCACTTGGTGGAGGGTTTGGGGGTAGGCTTGGTGATTATGGTGGGTATGGGGCCGGAGATGACTTTGGTGGTAGTTTTGGGGGCTATGGTGGTGGTGGTGCTGGGGGCTATGCTGGCTTTCGAGGAGAATCATCATTTGGCTACTCTAGTCGCTACGGATCGTACATGGGTGGTCTTGGTACTGGTTATGGCAACAGTGGGTTAAGTGCATATGGACGAGGTGTTGGGGGCTATGGGAGCTATGGTGGTCCAGGAACTGGTGGGGGCTATGAAACAGGCCCGGCTGCTGGTTATGGTGGAGCTGGAGGTGGTGGAGTGTATCCCAGTAGGGGAAGCTATGGTGGCAGTAGTCGTTACCATCCATACACAAGATAG 1065 0.4967 MTSRKSDNPHSGDGASPGKIFIGGLAKETTLETFVNYFEKYGEITDSVIMKDRQTGRPRGFGFITYADPSVVDQVIQENHIISGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDEFKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILADGNMIDMAGTQVEIKKAEPKKSSNPASLAPFASDSRARSYNDGFSGFGDSYGSFGGSGYGPGSYRSLGGGFGGRLGDYGGYGAGDDFGGSFGGYGGGGAGGYAGFRGESSFGYSSRYGSYMGGLGTGYGNSGLSAYGRGVGGYGSYGGPGTGGGYETGPAAGYGGAGGGGVYPSRGSYGGSSRYHPYTR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00056 354 Gene3D - 97 218 IPR012677 -
Vian6g00056 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Vian6g00056 354 Gene3D - 18 96 IPR012677 -
Vian6g00056 354 SUPERFAMILY RNA-binding domain, RBD 94 190 IPR035979 GO:0003676
Vian6g00056 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Vian6g00056 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 79 IPR000504 GO:0003723
Vian6g00056 354 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
Vian6g00056 354 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Vian6g00056 354 SMART rrm1_1 107 180 IPR000504 GO:0003723
Vian6g00056 354 SMART rrm1_1 19 90 IPR000504 GO:0003723
Vian6g00056 354 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 7 354 - -
Vian6g00056 354 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Vian6g00056 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00056 Vian-Chr6 1875460 1877800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00056 4 177 Eukaryotic Initiation Factors Gene Family AT1G71770 26.042 5.12e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00056 K12741 - gmx:100801373 406.757