Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00046 ATGGACAAGGCAGCTGCTGAACTTCAACGTGAGGCAGCAGATCCTTCTACTCTTCGTCACCATCATCAGTGTTGTGCTGGAAATGGGATTGGTGACAGTACCTCCTTGATTCTAGAGTCCAGAAGACCACGTCTCTCCTCTCTGCAAATACCAGCAAGGTCAGTGGAAAATGCATTATCCTCTTTCACAAAGACAGATGGTCCTACATTGATATCAAGTCCAGGTTCCAGTAGAGGACTTCCCCCAAGGCCAAATTCAGCCAGAGTCAAGTCCACTATGAAAAGTTTGCTCTCTGAGAGGAGCTTTAGGGCTAAGAATGGTTCACAAGATAGTGAAAGGACAGTTCTCATTGTTCCTGATAACTTACCGTCAGATTGTCCTGTGGACAAGCCTTCAACATCTAAGCCTTCAACTTCAAGGTCTCTTTCTCTTAACAAGATTCTGTATGCTTCATCAACCAAAGCCACACATTCATTGCCAGTTACTCCAACTGCAAATTCAGGTGCAGAGATTGTACAAGGAAGACATCCAGGATATGGTGCTTCGATGATGAACTTTCATTCTGTACAGAAAATGGAAGTAAATCAGCACATTACTCGATCGGTTTCCGTTCCTGTTAATATCAAAGCCGCTAATTTAAGACGTACAGATTCTAGAAGGTTGGTTCGTGTAATTTCGGCAAGATCACTTCTAACAACTGGTGAAGGCATCTCAACTCAGAATGCTTCCGGTTCAGAGATTGTTGTTGAAGATACTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTAGAGCTTGCAGAAGGAGGTAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAAGCAAGAAGTCCTTAACCTCCCCGTAACACTGTTGAAAATTTCTAATCCTCAAACTGTTTCTCCACAGCCAATGAATGCACCACGATCCCAGCAGAGAGAGGTGACTTCTTATAGGATATGGCAGGATTTATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAACTACTGGTTTCAGATATGGGCACTCATGCTCTTGCTATTTCATTGCCTTTCTCCTGTGTTTTGGGACTCCTTTCATCTATGATTGCTTCAACAATGGTGAACGGTAGTTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACCATACTTAATGTTAATGCCATTCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATACTCTGGTAACGGAATATGTTAGATGGAGAATGAGAAGATTGATTCAATCTTCTACGACACAGCAACTGCGTCGTGATCATGCACACCAACAACAAGAACATCAAAGATTGCATCCTCAACTGTAA 1488 0.4234 MDKAAAELQREAADPSTLRHHHQCCAGNGIGDSTSLILESRRPRLSSLQIPARSVENALSSFTKTDGPTLISSPGSSRGLPPRPNSARVKSTMKSLLSERSFRAKNGSQDSERTVLIVPDNLPSDCPVDKPSTSKPSTSRSLSLNKILYASSTKATHSLPVTPTANSGAEIVQGRHPGYGASMMNFHSVQKMEVNQHITRSVSVPVNIKAANLRRTDSRRLVRVISARSLLTTGEGISTQNASGSEIVVEDTSEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVLNLPVTLLKISNPQTVSPQPMNAPRSQQREVTSYRIWQDLSVLILVSMLAYFCFLEELLVSDMGTHALAISLPFSCVLGLLSSMIASTMVNGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGISISLNTLVTEYVRWRMRRLIQSSTTQQLRRDHAHQQQEHQRLHPQL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00046 495 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Vian6g00046 495 CDD RING_CH-C4HC3_MARCH 263 311 - -
Vian6g00046 495 MobiDBLite consensus disorder prediction 1 20 - -
Vian6g00046 495 MobiDBLite consensus disorder prediction 88 115 - -
Vian6g00046 495 SUPERFAMILY RING/U-box 259 314 - -
Vian6g00046 495 SMART ringv_2 262 311 IPR011016 GO:0008270
Vian6g00046 495 MobiDBLite consensus disorder prediction 1 18 - -
Vian6g00046 495 MobiDBLite consensus disorder prediction 60 140 - -
Vian6g00046 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 318 IPR013083 -
Vian6g00046 495 PANTHER OS02G0165000 PROTEIN 28 481 - -
Vian6g00046 495 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Vian6g00046 495 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00046 Vian-Chr6 1560695 1570157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00046 257 317 C3H Transcription Factor Family AT2G37950 46.774 6.23e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00046 - - pvu:PHAVU_006G002500g 880.167