Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00033 ATGGCCTCTTCCCACGTTACCGAGAAAGACCCCACCTCCAGATACGCGCGGTATGATGAAGTGCTGGGGAAAGGAGCCTTCAAGACTGTGTACAAAGCGTTTGACGAAGTAGATGGAATCGAGGTTGCATGGAACAGGATCAGCGCGGAGGACGTTGTGCAGACGCCGCAGCAGTTGGAGAAGTTGTACTCGGAGGTTCACTTGCTCAAGACCTTGAAGCACGACAATGTCATCAAGCTGTACAATTATTGGATCGATGATACCACAGCCACTGTCAACATGATCACCGAGTTGTTCACCTCCGGGAGTTTGAGGCAGTACCGTAAGAAGCATAAGAATGTGGATATGAAAGCCATTAAGAACTGGGCACGGCAGATTCTCCGTGGCTTGTGTTTTCTGCACAGTCAGACTCCTCCTGTCATTCACAGGGATCTGAAATGTGACAATATTTTTGTCAATGGGAATAGTGGACTGGTTAAGATCGGAGATCTTGGATTGGCAATTGTTATGCAACAGCCTACTGCCCGTAGTGTCATCGGTACACCGGAGTTCATGGCCCCAGAGCTTTATGAGGAGGACTACGATGAACTTGTTGACATATATTCCTTTGGTATGTGCATCTTGGAAATGATCACCTGCGAGTACCCGTACAGTGAATGTAAAAATCCAGCTCAGATATATAAGAAAGTTTCCTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATCCTGAAGTGAAGCAATTCATAGAGAAATGTCTAGTTCCAGCATCAATGAGACTGTCCGCATGTGAACTACTCAAAGACCCATTCCTTGCGACTGAAAACGCAAAGGAGATCAATCCTGATATACTGCAGCTGCCTAATAGTCCTCATATCAAATTGATGAATCCACCAGTGTGCAAGCCTCATCCCATGGAGATAGATTTTAACTCCAGGCGTAGCTCACCAGGCTCGTCTGTGGGAAGAATTGAGGAAATTTCTCAGGTTTCAACTTTTGATCTTGTGAAGATGACTGAGAATAACGAATTTAGGCTAAGAGGGGAGAAAAATGCTGAAAGTACAATTTCACTTACACTGCGAATTGCAGATGCACGTGGTGGAGCAAGGAATATCCATTTTCCATTCTACATCGATTCTGATACAGCAATTTCCATTGCTGAGGAGATGGTGGAACATCTGGAACTCACACATGAGGATGTGTCTGTCATTGCAGAGCTAATACAAGATATGATTGTTAAGCTTGAGCCCAACTGGAAGCCTTTGTGTGAGAACCTCTCATCTGTGACAGATCATTACAGGGCCCCTTCAGAAGTTCAGAATGAACAGTTGAGCTGTGATTGGCCATTACAATCAAGTGATTACGATATGAAGACGATGTATGAAGATCTAGTTCGTCCGGGGCCTGTGGATGGAGGTTATCAGGAGAAGCAAGAATCTGTTATGTCAGATATATCAGCAGAGTGTGGGATTACGATTGCCTCAGATTCTAAAGATGTGGAACCCGACATTTTCATTTTTGATGAATTCTGGGAGGGGTTTGATGTATTCAATTCCAATTCAGATGACAGGTTTAGTGGGCAAGAGGATGGACAAAAGAATCATTCAGAGAACTCAGAAGGCTCTCTAATCAATTCATGTTGCAGCCCATCTAAAAACTTTGACATGTCAAGCACTGGTTCTCTTACTATAGTTGACAAAGACCCTTCAGACGACCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCAACAATGCTTTCGTGAGCTTGTGAAGATGAGGGAGGAAGCCATAGAGAATGCAAAAAGGAGATGGATGACAAGGAAGACACCGGTTACGTGA 1848 0.4432 MASSHVTEKDPTSRYARYDEVLGKGAFKTVYKAFDEVDGIEVAWNRISAEDVVQTPQQLEKLYSEVHLLKTLKHDNVIKLYNYWIDDTTATVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSQTPPVIHRDLKCDNIFVNGNSGLVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEDYDELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVSSGIKPAALAKVNDPEVKQFIEKCLVPASMRLSACELLKDPFLATENAKEINPDILQLPNSPHIKLMNPPVCKPHPMEIDFNSRRSSPGSSVGRIEEISQVSTFDLVKMTENNEFRLRGEKNAESTISLTLRIADARGGARNIHFPFYIDSDTAISIAEEMVEHLELTHEDVSVIAELIQDMIVKLEPNWKPLCENLSSVTDHYRAPSEVQNEQLSCDWPLQSSDYDMKTMYEDLVRPGPVDGGYQEKQESVMSDISAECGITIASDSKDVEPDIFIFDEFWEGFDVFNSNSDDRFSGQEDGQKNHSENSEGSLINSCCSPSKNFDMSSTGSLTIVDKDPSDDLQLELEAIETQYQQCFRELVKMREEAIENAKRRWMTRKTPVT 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00033 615 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Vian6g00033 615 Coils Coil 571 598 - -
Vian6g00033 615 FunFam probable serine/threonine-protein kinase WNK9 99 278 - -
Vian6g00033 615 CDD STKc_WNK 14 273 - -
Vian6g00033 615 FunFam Probable serine/threonine-protein kinase WNK1 1 97 - -
Vian6g00033 615 Gene3D Transferase(Phosphotransferase) domain 1 99 281 - -
Vian6g00033 615 SMART serkin_6 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00033 615 SUPERFAMILY Protein kinase-like (PK-like) 18 309 IPR011009 -
Vian6g00033 615 MobiDBLite consensus disorder prediction 523 545 - -
Vian6g00033 615 ProSiteProfiles Protein kinase domain profile. 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00033 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vian6g00033 615 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00033 615 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 357 413 IPR024678 GO:0004674|GO:0005524
Vian6g00033 615 Gene3D - 355 445 - -
Vian6g00033 615 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00033 Vian-Chr6 1112119 1115012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00033 1 611 MAP Kinase Kinase Kinase AT5G41990 52.046 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vian6g00033 Pkinase 3.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00033 K08867 - gmx:100272202 987.638