Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00020 ATGGCGCACAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAGCGCTCCGATTTTCCTATTATCTGCGAATCCTGCCTCGGCGACAGCCCATACGTTCGAATGACCAAAGCAGACTATGACAAGGAGTGCAAGATATGTACACGGCCATTCACTGTTTTCAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAATCTGAGATCTGTCAGACGTGCAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGACCTTGAATATGGACTACCAGTTCAAGTTCGGGACACTGCTCTCAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAAGGAGTATTTCGCTGAAGAGCATGACCGTAGGAATGAAAGGATGGTGCAGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCATGAAGCTTCAAAGGACAACACCATATTACAAGAGGAACCGAGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATCGACATGAGATGCCAGTTACTGGGGAGTTGTCTCAACAAAATATTAAAGATCGTTATTATGGAGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGACCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGAGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAGCGGGCTTGTGCTTTTGTAACATATACAACCAGGGAAGGTGCAGAGAAAGCAGCAGAAGAACTCTGCAACAAATTGGTTATTAAGGGCCTAAGGTTAAAGCTGATGTGGGGCAGGCCTCAGACATCAAAACCTGAGTCTGACAGTTCTGATCAAGCAAGGCAGCAGGCATCTGTAGCTCACAGCGGATTGTTGCCTCGGGCAGTTATATCACAGCAGCAGAACCAGGACCAAACTCAAGGAGTGGTTTACTATAACAATCCTCCACCTCCTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCATCCCAAGATGGTCCTCCTCCTGGTGGGCCTTCTGGGTCAGGGGAGAACAAGCCTGGTTTGGAAAAGCAGCAGATGCAACATTATCCCCATTCATTGATGCCTCCTCCACCTGGTCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCCTCCAGCTCCCCCTTATCACCATCATCAGTATCCACCTCCATACAATGCTGCAGGGCCTCCATCACAGCCATCAGCAAGAAATCATCCTTATCAGCATTCTATACAGCCAGGGTCTGGACAGGCCGCAACTGCCCCAGCTGAAACTGGAACATCAACTTCAGGGTCACAGCAGCAATAA 1467 0.4676 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNKEYFAEEHDRRNERMVQARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELCNKLVIKGLRLKLMWGRPQTSKPESDSSDQARQQASVAHSGLLPRAVISQQQNQDQTQGVVYYNNPPPPQQERSYYPSMDPQRMGALIPSQDGPPPGGPSGSGENKPGLEKQQMQHYPHSLMPPPPGQYHHQYYPPYGYMPPAPPYHHHQYPPPYNAAGPPSQPSARNHPYQHSIQPGSGQAATAPAETGTSTSGSQQQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00020 488 SUPERFAMILY RNA-binding domain, RBD 228 314 IPR035979 GO:0003676
Vian6g00020 488 ProSiteProfiles Zinc finger C3H1-type profile. 163 190 IPR000571 GO:0046872
Vian6g00020 488 FunFam Zinc finger CCCH domain-containing protein 4 155 214 - -
Vian6g00020 488 MobiDBLite consensus disorder prediction 450 488 - -
Vian6g00020 488 Gene3D - 218 317 IPR012677 -
Vian6g00020 488 FunFam Zinc finger CCCH domain-containing protein 40 219 315 - -
Vian6g00020 488 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 387 IPR039171 GO:0003723
Vian6g00020 488 MobiDBLite consensus disorder prediction 309 326 - -
Vian6g00020 488 Pfam Torus domain 149 200 IPR032297 -
Vian6g00020 488 SMART rrm1_1 235 303 IPR000504 GO:0003723
Vian6g00020 488 SMART c3hfinal6 163 189 IPR000571 GO:0046872
Vian6g00020 488 MobiDBLite consensus disorder prediction 408 449 - -
Vian6g00020 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 307 IPR000504 GO:0003723
Vian6g00020 488 CDD RRM_RBM22 233 306 - -
Vian6g00020 488 MobiDBLite consensus disorder prediction 340 358 - -
Vian6g00020 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 295 IPR000504 GO:0003723
Vian6g00020 488 Gene3D - 154 216 - -
Vian6g00020 488 MobiDBLite consensus disorder prediction 340 488 - -
Vian6g00020 488 SUPERFAMILY CCCH zinc finger 165 188 IPR036855 GO:0046872
Vian6g00020 488 MobiDBLite consensus disorder prediction 306 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00020 Vian-Chr6 739735 745328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00020 221 295 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 9.45e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00020 K12872 - gmx:100779917 834.713