Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00019 ATGGAAGATAACAACAAGGCTTCATCTCCTGCTTCAACAACCGAAGGAAAACCAATACGATGCAAAGCTGCAGTTGCTAGAAAAGCTCGTGAGCCATTGGTGATTGAAGAGATAACTGTGGCGCCACCATTGCCCAGTGAGGTGCGGATTCGTGTTATCTGTTCCTCTCTCTGCCACAGTGACCTCACTTTTCGGAACCTCCAGGTTCCTCCTGCCATTTTTCCAAGGATTCTGGGTCATGAGGCAACTGGGGTTGTGGAAAGTGTAGGGAAGGATGTAACTGAAGTTAGAAAAGGTGATGTGGTTATTACAGTTTTCTTACCAGAATGTGGGGAATGCATAGATTGCAAATCAAGCAAGAGCAACCGTTGTTCTATTTTCCCTTTCAAGGTGTCTCCCTGGATGCCTCGACATGGTACCTCTAGATTCACCGACAAGAATGGAGACATCATAAGCCATTTTCTGTTTATTTCAAGCTTCAGTGAGTACACTGTGGTCGACATTGCCAATATTATCAAGATTGATCCACAAATTCCTCCTGACAGGGCATGCCTTCTTGGATGTGGTGTTTCAACAGGGGTAGGTGCTGCTTGGAGAACCGCTGGTGTGGAAGCAGGGTCTACAGTAGCCATATTTGGGCTGGGGTCTATTGGATTAGCAGTTGCAGAGGGAGCAAGACTTTGTGGAGCAACTAAGATTATAGGTGTTGACGTCAATCCAGAAAAATTTGAAATTGGAAAAAAGTTTGGAGTCACAGATTTTGTCCATGCCGGAGAATGTGGGGACAAACCTGTGAGCCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTCGAATGTGTTGGCACGGCATCAGTGGTGCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCAGGAGCCAGGATAAATCTCAGTTCCCATGAGGTCCTTCATGATGGGAAGTGTCTCATGGGATCCTTGTTTGGAGGTCTCAAACCGAAGTCTCATGTACCAATTCTCCTTAAACGTTACGTGGACAAGGAATTGCAGTTGGATGAATTTGTCACTCATGAGGTGGAGTTTAAGGACATCAACAAAGCTTTTGATTTATTGAGTACAGGAAAGTGTCTTCGATGTGTGATTTGGATGGGTAAATGA 1179 0.4504 MEDNNKASSPASTTEGKPIRCKAAVARKAREPLVIEEITVAPPLPSEVRIRVICSSLCHSDLTFRNLQVPPAIFPRILGHEATGVVESVGKDVTEVRKGDVVITVFLPECGECIDCKSSKSNRCSIFPFKVSPWMPRHGTSRFTDKNGDIISHFLFISSFSEYTVVDIANIIKIDPQIPPDRACLLGCGVSTGVGAAWRTAGVEAGSTVAIFGLGSIGLAVAEGARLCGATKIIGVDVNPEKFEIGKKFGVTDFVHAGECGDKPVSQVIIEMTGGGADYCFECVGTASVVHEAYASCRKGWGKTIVLGVDKPGARINLSSHEVLHDGKCLMGSLFGGLKPKSHVPILLKRYVDKELQLDEFVTHEVEFKDINKAFDLLSTGKCLRCVIWMGK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00019 392 FunFam S-(hydroxymethyl)glutathione dehydrogenase 193 333 - -
Vian6g00019 392 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 79 93 IPR002328 GO:0008270|GO:0016491
Vian6g00019 392 PANTHER ALCOHOL DEHYDROGENASE 16 388 - -
Vian6g00019 392 SUPERFAMILY GroES-like 14 200 IPR011032 -
Vian6g00019 392 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 178 353 IPR036291 -
Vian6g00019 392 Gene3D - 193 333 - -
Vian6g00019 392 Pfam Alcohol dehydrogenase GroES-like domain 46 174 IPR013154 -
Vian6g00019 392 Gene3D - 24 385 - -
Vian6g00019 392 FunFam Alcohol dehydrogenase 6 24 204 - -
Vian6g00019 392 Pfam Zinc-binding dehydrogenase 217 337 IPR013149 -
Vian6g00019 392 SUPERFAMILY GroES-like 341 389 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00019 Vian-Chr6 695620 702569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00019 47 367 Monolignol Biosynthesis Gene Families AT4G37990 21.829 6.48e-10 58.5