Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00018 ATGGTTTGCAAATGCTTAGTGAAGAAGATTAACGAAATCAACATTCTTTGTGGGATTGAAGCATGTGCTATAATTTATACTCCAGATAATCCTCAACCAGAGGTTTGGCCATCTGATAGGGCAGTCCAAAGTGTGCTTTCTAGGCTTAGGACAGTGTCTGAACTGGAGAAAGGCAAAAAAAGGTTGTGTCAGGAGAGCTTTTTGAGGCAAAGGATCATCAAAGCACAAGCACAACTGAGAAAACTAAGGAATGAAATAAGGAAGAAAGAGGTGACCCTTCTCATGTTTCAATACCTCAATGCTAATAACAACTTTGACAATTCAAGAATGATTGATCTTAATGATATTTCAAACTTGATTGATCAAAACTTGGAGAAAATAGAAAACAACATCAGCATAAGCCAAGCCCACAAGGTTAAACCTATTGCTGAAAATGGAGGAGAAACCATGAGTTCCCTTGTGAATAGTGTCATACATGTTGAGGCAATGCAACATGATAACTTCTCTATGGACCTTAACAATGGCTATGGTGATGAGATAAAACCATTGGCTGAGGACCCACAAACAGTACATGATTTTCTTCTTGCCTTTGATTTGAGTTCAATATCTGATTTCTCAGTTTCTTTCAACATTTGTGCTACTTCTCGCTCGCAGTTCTGCATACATTGCGAGCAACAAATTGATACAGGATCAAGATCTACGTTCTCAGAGGTACGCCTCAATGGAGAGATCGTTGTAGTTGGCAAGAGAAATAAGATTTTGGAGAGAGATCATCGGAGTTGGAGTGGAAATGGAGGTGGGAGCCGACGGAATCGGAGTGGGAGGGAGAGGCGTGCTTGGAAAGCTGGTGGGTTTTGTGGGGAGGAGAGGGAGAGGGGAGGAAGAAGGAGACGGCGGCACATGACTCTGAGTGTCGTGGTGGAGAAAGGAGTGGAGGGAAGAAACCCTAAATTCACGGTTGGTGGAGGTGGAAGATGA 978 0.4264 MVCKCLVKKINEINILCGIEACAIIYTPDNPQPEVWPSDRAVQSVLSRLRTVSELEKGKKRLCQESFLRQRIIKAQAQLRKLRNEIRKKEVTLLMFQYLNANNNFDNSRMIDLNDISNLIDQNLEKIENNISISQAHKVKPIAENGGETMSSLVNSVIHVEAMQHDNFSMDLNNGYGDEIKPLAEDPQTVHDFLLAFDLSSISDFSVSFNICATSRSQFCIHCEQQIDTGSRSTFSEVRLNGEIVVVGKRNKILERDHRSWSGNGGGSRRNRSGRERRAWKAGGFCGEERERGGRRRRRHMTLSVVVEKGVEGRNPKFTVGGGGR 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00018 325 Gene3D - 3 71 IPR036879 GO:0003677|GO:0046983
Vian6g00018 325 FunFam Agamous-like MADS-box protein AGL80 2 76 - -
Vian6g00018 325 SUPERFAMILY SRF-like 5 72 IPR036879 GO:0003677|GO:0046983
Vian6g00018 325 Coils Coil 65 92 - -
Vian6g00018 325 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00018 Vian-Chr6 684958 688739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00018 10 133 Type I MADS-box Gene Family AT5G48670 45.161 1.76e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian6g00018 SRF-TF 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00018 - - var:108319985 602.053