Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01902 ATGAAAGGTCAGTCCCAAAAGGTTCAACAGGCTGTGCTAACGGTATGTATTCTCTTTAGTATAATATTCACTCTCCTTCGATGCACTTACATGGTTGATCAACAGAAATTTCGGTCTGGCACCTATAATGTCATTGTTGCCACATCAATTGGTGAAGAAGGTCTTGACATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGAAGAAAGCATGATGGACGAATTCCTCATGTCTTCAAACCGGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCCCGTCAAAAGAATGTGAAGGATGACGAGCTCCACATTTCTCCATCGAAGAACAAACTTAATGTGGCTGAAATTGATTTACTTGAAACGTATTTTCACCCTACTAGGGAAAAGAATAGTAGAATCTCCCTTATTTCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTTAAGCATTCATCTGGAACATTGATGTTTATAGACATGATGCAGCTTGTTCAGGAAGATCTGTGCTTGGGACATAGGAAGCCAGTCACCCCTACCAAACTTGATAAAGACAATGAATCATGCTCTATGCATGCATTGAGAACGAGTGTAAACTCGGTTAATTGTCTGGACCTGGATTCGTATCATTTGGGCATTCAAAGCAAAGACTTCCTTGATCTAACTTGGCGAGAAGAAACATGTGAGGATGATGAGGGAATTCACGAGACTCCAATTTATAAGAGAAGAGTGTCAAATGAAGTTCCTGAGTCTCCCATTGATGAAAGAGGGAAATCAGGATACCATTCTGTTATACGTGACTATATTTTACCTGTCAGTGTCCACAAAGAACAGAATGTTAGTTCTTTAAGCTCAGGGGAAACTAAAATGGTCGACAATGAGAAGGGCACTGATAAGAATGTCGGTACTTCCTCTTTCAATGAAACTCAAAGCCCTTTACTTGACCTGAAGAATTGTACAATTAGAAGAGGACGAGTCTTTCTTTCCCAAACTGAGGAAGGCCATGTACATAACTCTGACCTAAGCCTCGGTGAAGAAGCACTTCCAGCAGATTGTGGTGAAATGTCTGAAAGCATTAAACCTTCACGCAAATTTAAAAGGTTGCGAAAAGCTGAAGATACTGAAAGCAATAGGAATCAGAAAAGTATTAAATTTTTTTATTCAACAGTGAACTTTCTGAAGTCATCCCATGCCTCCAATCCCGCACAATATGAGCATGGACGAGGTAAAAGGAAATCAGCATACAATGTGAGAGACTTCATTGAGGAGGAAGCGGAGGTATCTTCAGATGCCTATGTATCTAATGATGAAGATGGTGAGGATGACAATTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACAGCAGCCAGTCAGCCTCAAGCTAGTAGAATGGACATGATGACAATTTACAGGCGTTCTTTGCTCAGTCAAGCACCGAGTAATGGACCGCTTGATTTTTCTGCCACCTTCACTCCCGACTGTGTGACTGTGGCAGCCAGTACTAGTGAAAGTGGGGATTCTTCAGGGAAGTCATTCAATCATTTACATACAGAGCCAACCAAAGAGTCAGCAAATCGGACTTCAGAATCCGTCACCATCGACCAGTTAACCTCAGAAGCAGTGTTTTCAAGTTGTTGTCCTAAGGGAAATGGGACAGAGATAAAAAGTCACAAACGAAGATTGTCGTTTTACCACTCTGAACACTTCCCGACTATGAACCTTGAACAAGAATTTGCTCTTCAATCAAAGAAAGAAGTGGGGGATGTGGATGCAATTACAAATGTTTTGTGTGATGATCAGTTTTATAATGATCTCGATCTTGACGAGTTGGAGGCGAAAGCAACTTTGGTTCTAAAACGGAAATTAGATTTGTCCATTCAGAAGCAAGATAAAGTCTCTCAATCTCACTTACCCAACCTTGATATTTTTGGGTCTCCTTCATTTGATCTTGGGATATGA 2025 0.4054 MKGQSQKVQQAVLTVCILFSIIFTLLRCTYMVDQQKFRSGTYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRIPHVFKPEVQYVELSIEKFIPRQKNVKDDELHISPSKNKLNVAEIDLLETYFHPTREKNSRISLISFPHFQTFPSRVHKVKHSSGTLMFIDMMQLVQEDLCLGHRKPVTPTKLDKDNESCSMHALRTSVNSVNCLDLDSYHLGIQSKDFLDLTWREETCEDDEGIHETPIYKRRVSNEVPESPIDERGKSGYHSVIRDYILPVSVHKEQNVSSLSSGETKMVDNEKGTDKNVGTSSFNETQSPLLDLKNCTIRRGRVFLSQTEEGHVHNSDLSLGEEALPADCGEMSESIKPSRKFKRLRKAEDTESNRNQKSIKFFYSTVNFLKSSHASNPAQYEHGRGKRKSAYNVRDFIEEEAEVSSDAYVSNDEDGEDDNSFDSFIDDRTNPTAASQPQASRMDMMTIYRRSLLSQAPSNGPLDFSATFTPDCVTVAASTSESGDSSGKSFNHLHTEPTKESANRTSESVTIDQLTSEAVFSSCCPKGNGTEIKSHKRRLSFYHSEHFPTMNLEQEFALQSKKEVGDVDAITNVLCDDQFYNDLDLDELEAKATLVLKRKLDLSIQKQDKVSQSHLPNLDIFGSPSFDLGI 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01902 674 Gene3D - 1 111 IPR027417 -
Vian5g01902 674 MobiDBLite consensus disorder prediction 374 394 - -
Vian5g01902 674 MobiDBLite consensus disorder prediction 446 483 - -
Vian5g01902 674 MobiDBLite consensus disorder prediction 377 394 - -
Vian5g01902 674 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 90 658 - -
Vian5g01902 674 MobiDBLite consensus disorder prediction 522 550 - -
Vian5g01902 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 127 IPR027417 -
Vian5g01902 674 MobiDBLite consensus disorder prediction 300 326 - -
Vian5g01902 674 SMART helicmild6 10 86 IPR001650 -
Vian5g01902 674 MobiDBLite consensus disorder prediction 522 536 - -
Vian5g01902 674 MobiDBLite consensus disorder prediction 449 465 - -
Vian5g01902 674 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 137 IPR001650 -
Vian5g01902 674 MobiDBLite consensus disorder prediction 469 483 - -
Vian5g01902 674 Pfam Helicase conserved C-terminal domain 35 85 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01902 Vian-Chr5 41009492 41015750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01902 35 84 Eukaryotic Initiation Factors Gene Family AT3G13920 40.000 8.93e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01902 K10896 - vra:106756418 1174.46