Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01900 ATGGCTTTCTGGGGAGTGGAAGTGAAACCAGGAAAGCCTTTCACTCATAAATACGAGGATTCCAAAGGACGCCTCCATATTTCAATGGCCACTCTTGGGTTGGGCACTGCGACAGCAAAAAGCACACTGCAGTGCAATGTGGGAAACAGGAGCCCTGTATATCTATGCTCTCTCTATCCTGGAAACGCAGAGTCATTGCAATTAAACTTAGAGCTCGAAGAAGTTGATCAAGTTCTTTTCTCTGTAATTGGTCCTCGGAGCATTCATCTCTGCGGGTATTATCTCGCCACTGCCCGCAACGCCAATCTTATTGATGATTCTGAATCATACGGGGAGGATATCGCTGATACAGAAACAGAGAGATCTGATTACAGTGACGAAGATGGGTATGATGATAGTTTCATCGACGATGACATTGTTCCAGAGGCTTCCTCACCATCTCTTATTTCCAAAGAAGAGGAAGCTTCGCATGACAACGGACCAAAAATTAGGAAAGGCAGTCTTCGACGGCTTAGGAAGATGTACCAGTCAGTTGAGTCAGATGATGATGGCTGTGGCGGAGAAAAGATAATTGTCAATGACAGAATCCATGACCAAGTCCAGGAAACTGACAATGAAGATAGCCTCCCTATTTCATCTATTTACAAGAATAAAGCCTCTGGAAGGGTATTGGACAAAGAAATGGATGTTAGTGTTGTCAGAGGAGCTGGTGATGCCAGCAACAAGAATGAGGAAGATGGTGGAAATAATATTTTTGAAACAAATCTAGAGGCTGGACATGTCCTTGTGGATAGTCAGACATATAGGGAAGCTGTGCCATCAAAGCACTTGGTAGATCCTTGCACATCTCTGGATGTTGGGGATGTTAAAAGTCCAAAAAAGAAAAAGAAGAAAAAGGAAAAAGAGGCAAAGAGTTCCTGTAATGGCCGTTCTATCAAACTAGATAATGTTATAAATGAGCTAAAAATGGAAGAGATGACCCAGGTTATTGTGGCAGGAGGTAAACAAGAGCAGCATGTTGATGATAAGGAAACTGAGACCACAGATAAAATGCTGCCTTCCTCTCAGGTTGATCATGGACTGGGTGAAAAGCCAAAGAAGAAAAAGAAAGAAAGATCTAAAGAGGGGATGGTTTCAATTGCTACTGATGGTTATCATAACAGTCTTGTTAATCTGCCTCTAAGAAATGAACAACACTCAGTTAATGAGGATGTTAAAATTTCAGGCAATGCCGCTGAGATGGATCCTAAAAAGAATAGAGCAAAGAGGAAAAAGAAAGAACAAGTAAACAAAAGTGACTATGGATATAATGAAGAAATCTTCCAAGAGGACAACAAGGCCAACAGAGATGCAGCAGGGTCACAGAATGCGATTCATAATTTTTTTGAAGAAAAAGAGCAGCATCAGAAGCTAACTAATGAGAAGATGGTAGACAATGGTGCTTATGACTTACCTGATGGAAATCAATCTGAGAATAGAAAAGCTAAGAAAAGGAAGAAAATGAGTAAAAGTCAGGGCAATGGGGAAGTTGTAAATTCTAATATTACTGTATATGTTGAGCGAAGTGGTGAGACTGAGATGATGGAGGAGGACAGAAGTAAGGGGGAAGATGCAAAACATTCCAATGTTAGAACATTGAAAAATGGACTAGTTATTCAGGAACAAGAGAAGGGGAAAAAAGATGGCAAAATCGCAGCTTCAGGAAAAAAGATTAGCATCTATTACACTGGCAAGTTGAAGGAAAATGGAGCTGTCTTTGAGTCAAACGCTGGCCAAACTCCTTTCAAATTTCGCCTTGGTAAAGGAGAGGTTATCGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAAAAGAGAAGACTTGTCATTCCACCAACATTGACGTCTGAGAGTGATGGGCACTCTGACAAAATACCACCAAATTCATGGTTGATTTATGACATTGAACTAATTAAAGTTCATTGA 1971 0.4099 MAFWGVEVKPGKPFTHKYEDSKGRLHISMATLGLGTATAKSTLQCNVGNRSPVYLCSLYPGNAESLQLNLELEEVDQVLFSVIGPRSIHLCGYYLATARNANLIDDSESYGEDIADTETERSDYSDEDGYDDSFIDDDIVPEASSPSLISKEEEASHDNGPKIRKGSLRRLRKMYQSVESDDDGCGGEKIIVNDRIHDQVQETDNEDSLPISSIYKNKASGRVLDKEMDVSVVRGAGDASNKNEEDGGNNIFETNLEAGHVLVDSQTYREAVPSKHLVDPCTSLDVGDVKSPKKKKKKKEKEAKSSCNGRSIKLDNVINELKMEEMTQVIVAGGKQEQHVDDKETETTDKMLPSSQVDHGLGEKPKKKKKERSKEGMVSIATDGYHNSLVNLPLRNEQHSVNEDVKISGNAAEMDPKKNRAKRKKKEQVNKSDYGYNEEIFQEDNKANRDAAGSQNAIHNFFEEKEQHQKLTNEKMVDNGAYDLPDGNQSENRKAKKRKKMSKSQGNGEVVNSNITVYVERSGETEMMEEDRSKGEDAKHSNVRTLKNGLVIQEQEKGKKDGKIAASGKKISIYYTGKLKENGAVFESNAGQTPFKFRLGKGEVIEGWDVGLEGMQVGEKRRLVIPPTLTSESDGHSDKIPPNSWLIYDIELIKVH 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01900 656 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vian5g01900 656 MobiDBLite consensus disorder prediction 279 308 - -
Vian5g01900 656 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 564 653 IPR001179 GO:0003755
Vian5g01900 656 Gene3D Nucleoplasmin core domain 1 99 - -
Vian5g01900 656 Gene3D - 516 656 IPR046357 GO:0003755
Vian5g01900 656 MobiDBLite consensus disorder prediction 334 374 - -
Vian5g01900 656 MobiDBLite consensus disorder prediction 478 510 - -
Vian5g01900 656 MobiDBLite consensus disorder prediction 360 374 - -
Vian5g01900 656 MobiDBLite consensus disorder prediction 409 431 - -
Vian5g01900 656 SUPERFAMILY FKBP-like 498 655 - -
Vian5g01900 656 MobiDBLite consensus disorder prediction 146 166 - -
Vian5g01900 656 MobiDBLite consensus disorder prediction 151 165 - -
Vian5g01900 656 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 568 656 IPR001179 GO:0003755
Vian5g01900 656 MobiDBLite consensus disorder prediction 410 431 - -
Vian5g01900 656 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01900 Vian-Chr5 40993709 41000842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01900 567 653 Calmodulin-binding Proteins AT5G48570 44.318 5.59e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01900 K14826 - gmx:100798135 806.594