Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01898 ATGAGAATGAGGATTTTGCAGTTGTGTTCTCCCATGGCTTCCCCATGGACATGCAGAGCTCCTCTGCAGGTTGAACTGTGCAAGTTCTGGATTTTGAGAAAAAGGAGAGGTAGCAGCAATTTGCAGGTGCAGTGCTCCGGCAGACCCCCGAGAGCCCCTCCTGGAGTTGACACCAGAATCCACTGGGACAACGAGGATGAAGGGTGGATTGGAGGCGGAGATAGAGATAAAGATACCAAATCCAGCAACATGTTTGCCGACGGTGATGACTTGTCAGATTTGCTCCTCACTTCTTTAGGCTCTCATTACGAATTCTTAGGAGTATCACCCAATGCGGATTTAGAAGAAATCAAAGTTGCTTATAGGAAACTATCGAAGGAGTATCATCCTGACACAACCTCCCTCCCTCTGAAAAGTGCGTCGGAAAAATTCATGAAACTGAGAGAGGTTTACAACGTTCTGAGCGATGAAGAGAGTCGAAAATTTTATGATTGGAGCCTTGCTCAAGAGGCTGCAAGCCGACATGCAGAGAAGATGAGAATGAAATTAGAGGATCCTCGGGAGCAACAACTCAGGAACTGGGAACCTGTTCCCGACATGGTCGACCGCCTCGGTGGAAGGAATATGAAGCTCAGTGATCAGGCAGTCTCTGCCATCACTATTGATGTTTTTATCATTATTTTTTCCATATGCTGTATCATTTACAAGATTCTTACGTACGACAAATATTAA 732 0.4563 MRMRILQLCSPMASPWTCRAPLQVELCKFWILRKRRGSSNLQVQCSGRPPRAPPGVDTRIHWDNEDEGWIGGGDRDKDTKSSNMFADGDDLSDLLLTSLGSHYEFLGVSPNADLEEIKVAYRKLSKEYHPDTTSLPLKSASEKFMKLREVYNVLSDEESRKFYDWSLAQEAASRHAEKMRMKLEDPREQQLRNWEPVPDMVDRLGGRNMKLSDQAVSAITIDVFIIIFSICCIIYKILTYDKY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01898 243 Gene3D DnaJ domain 91 187 IPR036869 -
Vian5g01898 243 ProSitePatterns Nt-dnaJ domain signature. 144 163 IPR018253 -
Vian5g01898 243 PRINTS DnaJ domain signature 121 136 IPR001623 -
Vian5g01898 243 PRINTS DnaJ domain signature 236 243 IPR001623 -
Vian5g01898 243 PRINTS DnaJ domain signature 139 159 IPR001623 -
Vian5g01898 243 PRINTS DnaJ domain signature 103 121 IPR001623 -
Vian5g01898 243 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 34 241 IPR044618 -
Vian5g01898 243 SMART dnaj_3 100 159 IPR001623 -
Vian5g01898 243 Pfam DnaJ domain 102 164 IPR001623 -
Vian5g01898 243 CDD DnaJ 102 156 IPR001623 -
Vian5g01898 243 FunFam DnaJ homolog subfamily C member 4 91 188 - -
Vian5g01898 243 ProSiteProfiles dnaJ domain profile. 101 167 IPR001623 -
Vian5g01898 243 SUPERFAMILY Chaperone J-domain 100 168 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01898 Vian-Chr5 40971158 40974188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01898 102 169 C2H2 Transcription Factor Family AT1G74250 37.500 9.17e-08 50.4