Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01893 ATGACTATGCAGCTTCCGTGTGACAGTGAGGGCGCCTGCATGCAGTGCCAGGCCGTGCCCGGAGAGGAAGAGAGGCTGCTATGCGTCACCTGCAACACTCCTTGGCACCTTCCATGCCTGTCCTCCCCTCCAACCACCCTTGCAGCCACCGCTAACTGGTCCTGTCCTGACTGCTCCGATATCGATCCTCAACCTTCACCTCTCCCTGCTCCCCTTCGCAATGACCTCGTCACTGCAATGCTTACCATTGAAAATGATGATTCTCTCACCCAAACTCAGAAAGCCAAGAAACGCCAACAACTCATGACTGGAAAATCTCCTGCACAAGATGAGGATGACGATGACGATGACGAAGAAGAAGAGAACCAGACTAAATCCACAAATGTTTGGCACATGCTCTCTCAATCTATCAAATGCTCTATCTGCCTCCAGTTACCGGAGAGGCCCGTCACGACTCCTTGTGGGCACAGTTTCTGTCTGAAGTGTTTTCAGAAATGGCTTCGACGAGGAAATACGAAATGTGTCCAATGCCGCCAGCTTGTTCCGGCAAAGATGACAAGCCAGCCCCGGATCAATTCTGCATTGGTTTTTGCAATTCGCATGGCCAGGACCAATTCTAACCCTAATGGTCGTGGAGGAGATAGGACTGTCAACCATTTTTGGCACAATCAAGACAGACCCGATGAGCCCTTTACCACAGAACGTGCTCAGAGGAATGGCCGTGCCAATGCGGCCAGTGGAAAAATATTTGTGACCGTTCCGACTGATCATTTTGGTCCAATCACTGCAGAACATGACCCCATGAGGAATCAGGGTCTGCTGGTGGGTGAGAGTTGGAGAGACAGACTGGAATGCAGACAATGGGGTGCTCACTTCGTCCCTGTGGGTGGCATTGCTGGCCAATCAGATCGAGGTGCACAATCTGTTGTCCTTTCTGGTGGTTATGTGGATGACGAAGACCATGGAGAGTGGTTTCTCTACACTGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGCAGTTTGAGAAGTACAACCTTGCACTTCAAGTTAGCTGTCTTAAGGGTTATCCGGTTCGAGTTGTCAGATCTCACAAAGAAAAGCGATCTTCATATGCCCCCGAGACTGGCGTGCGCTACGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCAGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTTAGGTGTGACAATGAACCAGCCCCCTGGACAAGTGATGATCGTGGAGATAGGCCCAGACCCTTACCGGTCATCCGTGAACTGAAAAAGGCCACCGTCACATTTGAAAGGACTGAATCTCCGTCTTGGGATTTTGATGTGCAAGATTCTCTTTGGAAGTGGAAGAAACCACCACCTCCCAGCAAACGAAAGGTGCAAAGTGAGGAACCCGTAGAGGGAATAAGGGCAAGGTCAACTAGGGAAACGACGAAGTTCCAACTTGAGATGCTCAAGAAAAGATTGCACATGGGGTTCTCGTGCATGATATGCACGGAGGTTATGGTTTCACCGGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTAAATTTGCTGGTCAGGCTTTGGTGAAGGAGAGAAGCAGGGGCGGGAGAACGCTTCGGTCCCAAAAAATTGTGATACAATGTCCTTCTTGCCCTATTGACATCTCGGATTATCTTCAGCACATTCAGGTTAATGTAGATTTGAAGGATGCGATTGAGTCACTGAAAGCCAATGTTGCAGAAATTGAAAAATCGCTGGAGTCAACTGGAGACGAAGCAGATGGATTAGATGACAATACTGATTCAGGGAACCAAAATTCTGCAAAGGAGTTGAACGATCTACCTGAAGGATCTGATGTTCATGAGCTTGAGGACACCAGTGATGAGGAGCAAGATCCAGAAGTAATGTGCAATAGAAAGAGAAAGAAAGGTGATGATGAAACACAATCGCCTGATGATAAAATGGATAAAAGAGATAAAATAAACAAAATGACTGAGCAAGAAGTGGATGATAAAAATGATTCTTCATCATCATGTCCTCTCAATCTTCCATGA 2112 0.4773 MTMQLPCDSEGACMQCQAVPGEEERLLCVTCNTPWHLPCLSSPPTTLAATANWSCPDCSDIDPQPSPLPAPLRNDLVTAMLTIENDDSLTQTQKAKKRQQLMTGKSPAQDEDDDDDDEEEENQTKSTNVWHMLSQSIKCSICLQLPERPVTTPCGHSFCLKCFQKWLRRGNTKCVQCRQLVPAKMTSQPRINSALVFAIRMARTNSNPNGRGGDRTVNHFWHNQDRPDEPFTTERAQRNGRANAASGKIFVTVPTDHFGPITAEHDPMRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQQFEKYNLALQVSCLKGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDRGDRPRPLPVIRELKKATVTFERTESPSWDFDVQDSLWKWKKPPPPSKRKVQSEEPVEGIRARSTRETTKFQLEMLKKRLHMGFSCMICTEVMVSPVTTPCAHNFCKSCLEGKFAGQALVKERSRGGRTLRSQKIVIQCPSCPIDISDYLQHIQVNVDLKDAIESLKANVAEIEKSLESTGDEADGLDDNTDSGNQNSAKELNDLPEGSDVHELEDTSDEEQDPEVMCNRKRKKGDDETQSPDDKMDKRDKINKMTEQEVDDKNDSSSSCPLNLP 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01893 703 MobiDBLite consensus disorder prediction 605 703 - -
Vian5g01893 703 SUPERFAMILY RING/U-box 511 595 - -
Vian5g01893 703 Pfam RING-type zinc-finger 514 548 IPR027370 -
Vian5g01893 703 SUPERFAMILY RING/U-box 138 189 - -
Vian5g01893 703 MobiDBLite consensus disorder prediction 475 489 - -
Vian5g01893 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 606 IPR045134 -
Vian5g01893 703 Gene3D - 239 436 IPR036987 -
Vian5g01893 703 SUPERFAMILY PUA domain-like 242 440 IPR015947 -
Vian5g01893 703 Coils Coil 584 611 - -
Vian5g01893 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 204 IPR013083 -
Vian5g01893 703 ProSiteProfiles Zinc finger RING-type profile. 139 178 IPR001841 -
Vian5g01893 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 61 IPR013083 -
Vian5g01893 703 ProSiteProfiles YDG domain profile. 268 416 IPR003105 -
Vian5g01893 703 ProSitePatterns Zinc finger PHD-type signature. 13 58 IPR019786 -
Vian5g01893 703 FunFam Predicted protein 92 204 - -
Vian5g01893 703 MobiDBLite consensus disorder prediction 87 127 - -
Vian5g01893 703 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Vian5g01893 703 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Vian5g01893 703 MobiDBLite consensus disorder prediction 470 489 - -
Vian5g01893 703 SUPERFAMILY FYVE/PHD zinc finger 5 66 IPR011011 -
Vian5g01893 703 SMART G9a_1 263 420 IPR003105 -
Vian5g01893 703 SMART Ubox_2 136 194 IPR003613 GO:0004842|GO:0016567
Vian5g01893 703 MobiDBLite consensus disorder prediction 651 692 - -
Vian5g01893 703 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 239 434 - -
Vian5g01893 703 Pfam Zinc finger, C3HC4 type (RING finger) 139 177 IPR018957 GO:0046872
Vian5g01893 703 Pfam SAD/SRA domain 271 419 IPR003105 -
Vian5g01893 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 615 IPR013083 -
Vian5g01893 703 SMART ring_2 514 570 IPR001841 -
Vian5g01893 703 SMART ring_2 13 58 IPR001841 -
Vian5g01893 703 SMART ring_2 139 177 IPR001841 -
Vian5g01893 703 MobiDBLite consensus disorder prediction 87 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01893 Vian-Chr5 40930072 40933602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01893 1 605 C2H2 Transcription Factor Family AT5G39550 55.628 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01893 K10638 - gmx:100801535 1115.52