Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01883 ATGGCAAAGAATGTGATGAATGCGATTCAGTACGAGAAGTATGGAGGAGGTCCCGGCGGCTTGAAGCACGTTGAAGTTGGAGTTCCCAGTCCAAAGAAGAAGGAGGTTCTGGTGAAAGTGGAAGCGGTTAGCATCAACCCAGTCGATTGGAAGATTCAGAAGGGTGTTATGAGACCTTTATTTGTCCCTGGAAACTTTCCTCATACACCTTGCACCGATGTCGCTGGAGAGGTGGTTCAGATCGGACCACAAGTCAACGATTTCAAAGTTGGAGACAAAGTCCTTTCCAAACTCTCTACTCGATATGGAGGTGGATTGGCTGAGTTTGCTGTGGCTAGTGAGAGCTTAACAGCTTCGAGGCCAACTGAAGTCTCAGCTGCTGAAGCTGCGGCGTTACCTATTGCCGGGCTCACAGCTCGTGATGCCCTCGCTCAAATTGCAGGAGTCAAGCTTGATGGGACTGGTGAGCCTAAGAACGTTTTGGTTACTGCTGCTTCAGGTGGTGTAGGTCACTATGCTGTTCAACTGGCAAAGCTAGGGAACAACCATGTCACAGCCACTTGTGGGGCTCGCAACATTGAGTTTGTTAAGGGCTTAGGTGCTGACGAGGTTCTTGATTACAGGACTCCGGAGGGGGCAGCGCTCAAGAGTCCATCTGGTAGGAAATATGATGCAGTCATAAACTGCACAACTGGAATACCTTGGTCGACTTTAGATGCTAATTTGACTGAAAAGGCAGTGGTGGTTGATTTAACTCCTAATCCATCTTCATTTCTGACTGCTGCTCTGAAGAAAGTTACTTTTTCCAAGAAGCGGCTGGTGCCATTTTTTGTAGATGTCAAGCGTGAGGGCCTGGACAATCTACTTCAGTTATTGAAGGATGGGAAACTCAAGTCTGTTATTGATTCCAGGTTTCCTTTGAGCAAAGCCGAAGATGCTTGGGCTAAGAGCATTGATGGCCATGCCACTGGAAAAATCATTGTTGAACCATAG 993 0.4763 MAKNVMNAIQYEKYGGGPGGLKHVEVGVPSPKKKEVLVKVEAVSINPVDWKIQKGVMRPLFVPGNFPHTPCTDVAGEVVQIGPQVNDFKVGDKVLSKLSTRYGGGLAEFAVASESLTASRPTEVSAAEAAALPIAGLTARDALAQIAGVKLDGTGEPKNVLVTAASGGVGHYAVQLAKLGNNHVTATCGARNIEFVKGLGADEVLDYRTPEGAALKSPSGRKYDAVINCTTGIPWSTLDANLTEKAVVVDLTPNPSSFLTAALKKVTFSKKRLVPFFVDVKREGLDNLLQLLKDGKLKSVIDSRFPLSKAEDAWAKSIDGHATGKIIVEP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01883 330 SMART PKS_ER_names_mod 16 328 IPR020843 GO:0016491
Vian5g01883 330 SUPERFAMILY GroES-like 3 151 IPR011032 -
Vian5g01883 330 CDD MDR1 9 328 - -
Vian5g01883 330 PANTHER ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE PROTEIN C16A3.02C 4 329 - -
Vian5g01883 330 Pfam Alcohol dehydrogenase GroES-like domain 34 98 IPR013154 -
Vian5g01883 330 Gene3D - 13 328 - -
Vian5g01883 330 Pfam Zinc-binding dehydrogenase 199 328 - -
Vian5g01883 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 124 277 IPR036291 -
Vian5g01883 330 Gene3D - 143 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01883 Vian-Chr5 40874484 40875864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01883 104 302 Monolignol Biosynthesis Gene Families AT4G34230 27.184 9.40e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01883 K00224 - gmx:100790762 542.732