Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01879 ATGGCCCAGCAGTCATCTAGGCTCCAGCGTTTGCTTACTCTCCTGGATACTGGGTCAACCCAAGCTACAAGGTTGACCGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTCAAGAAGGTTTCTCAATATCTCCGCAGTAAAAATTGGGATACACGAGTTGCGGCTGCTCATGCAATTGGATCAATTGCTGAGAATGTTAAGCACATAAGTTTGACTGAACTTTTTGCTTCTGTTTTATCACAAATGAGTGAGAATGGGATATCTTGTAGCATTGAGGATCTGTGTGCATGGCCATATTTACAATCAAAAATTACAGGAAGTGCATTCAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGTGCCTTACTTGCATCAGGGGGCCAGGAATATGATATTGGAAATGATAGTATAAAGAACCCAAAGGAGCGATTGGTTCGACAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGACGAAGATCTTATGGTGTCCAAATCAGACCCACATCTGAATGGGATTGATCGTAGAGTTTTTACTTCTTGTTCTGCACATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTCAAATCGAAGTGGCCAAGTGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCAAAAATAAACTCAAAGGACCAGACAAAAAGCTGGTGTGAAGATGGAGGTACAGAGGCATCAGGTGCTCAAAGTTTGACTCCAAAAGGCACATGTCCCGATTCACTGAATTACAGTAAGGCATTCATGGATGTTAATCATGACGACGATGGCTTTGAGCATGATGGGGAAGGGCAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATAGATATGTTTGATCCTGTTTGGGAGGTACGACATGGTAGTGTGATGGCACTGAGAGAGATTTTAGCACATCAAGGTGCTTCTGCTGGCGTATTTAAACCTGACTCACACTTGGGTGGAACCTTGTTTATTGAATTAGAAGACAAAAGTATACCAACCACATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTTTCAGCTGATGAGTTCGATTCAAACTTGAAGAGGCCAAAACTTGAAGATGTGTCATCACCAACCTTTATGGATAGTGTGATGACTTGCAACAATATTACTTCTGAAACCCATGGATGCAATTTAACTTTGGATTACGAGAATGGGCAATTTAATGGTAATTCCAATGACATGGATCTGGAGTCTCACTCTGATGGCTCACGTGATGCATGCAAAGAGTCTGCCAGTATAACAGAACAGAAAGGTCATCTTGATGACAATCAGATGCCCTCCGGAAATCTTATTGCGCTGAGAAATCTTCCTCAGAACTGTGAGCTGATGAACTCTGTTAAAGTGGCTAGAAGTTCCTGGCTTCAAAACTGTGAATTTCTTCAAGATTGTGTGATACGCTTTTTGTGCGTGTTGTCACTTGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCTTTAGGTGCTGCATTTAAGTATATGCATCCCGCACTAGTAAATGAAACATTGAACATATTGTTGAGAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATAAAATATTTGGTTGCTGTGCGGCAGGAAATGCTGTCTGATTTGCTCGGAGGAGTTCTTCCTGCCTGTAAATCTGGTTTGGAGGACCCAGATGATGATGTCCGGGCAGTTGCTGCTGATGCTTTAATACCTGCTGCATCTGCAATTGTTTCCTTGCAGGATCAAACATTGCATTCAATTGTGATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACCAGCAGTGTAATGAATCTACTGGCAGAAATCTATTCTCAAGAAGATATGGCGCCAAATATGTATGAAGTTTTGAGATTGGGAGACAAGGAAATGGAAAATGGAGGTGGTGGTGGTGATTGTGATGGAGAAGAAAATCCTTATGTGCTTTCAACATTGGCACAACGTTTGTGGCCCTTTATGAGGCATAGTATTACATCTGTTCGCTATTCTGCAATAAGGACTTTGGAGAGGCTACTTGAAGCTGGATATAAAAGAAGCATGTCTGAGTTGTCTGGTGCTTCATTCTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATCGTATTTCAGAATCTGCTATTGGAAACAAATGAAGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTATGGAGGACTTGGAGATTGCTGCAAGTTTTTACGGGGCTTCTTGGATTGAACTTGCATCTACACCATTTGGATCAGCATTAGATGCCTCAAAGATGTACTGGCCTGTTGCTTTTCCACGAAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAATTTGGTATGGAATTTAGTCTTGATTCTATTAAAGGATCTATTCCACAAGATAGAAATGGAGATGTTCCTATGAATTCTGTTAAGATAGTTGTCGGTGCTGATGTGGACACATCTGTTACTCATACCCGAGTAGTTACAGCAACTGCTTTGGGATATTTTGCTTCTAAGCTGCCAGTGGGTTCTTTAAAATATGTGATTGATCCACTATGGAGCTCTCTAACCTCTTTCTCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAAATTAAGCTCAAGAATTCGTCCAAAAACCTTGATGGTATCCCTGGTGCCGTCAAAGGTTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCAACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACTTATGCAAAGATGCGCAGTGAGGCTGGTCAATTACTAAATGTAGTCAAGTCTTCTGGTATGTTTGATGAGTTATTGACAACAACACAAATTGAGTTGGACCGCTTGAGTGTGGATGACGCTATTGGTTTTGCTTCAAAAATTCCAGCTTTGTGTAATGATAGTTCTGCAAATGAGTTCTTGGCAAAGAACATCATGGATGATATTGAATCCTCCAAACAGAGACTCTTGACAACTTCTGGATATTTAAAATGCGTTCAGAGCAACTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCCGTTGTCTGGATGTCTGAATTTCCTACACGACTTACACCAATCATTTTACCTTTGATGGCTTCTATCAGACGAGAGCAGGAGGAAATACTCCAAATGAAGTCTGCTGAGGCCCTTGCTGAGCTAATGTATCACTGTGTTGCGCGTAAACCTTGCCCCAATGATAAATTAATTAAGAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCCAAATCCCTTTGTACCATTGAGAGTATTGATGATCAGGGTCTTCTGTCTTTTAGAACTCCTGTTAGCAAACAGAAGTCAAAGGTCCATGTGCTAGCTGGTGAAGATCGTTCCAAGGTGGAGGGATTTTTAAGTAGACGAGGATCTGAGCTATCATTGAGGCTTCTATGTGAAAAGTTTGGTGCGTCATTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTTCTTAAACCTATAGAGGACACCAAGGAAAAGCAATTCAATTCATTACCATTTCTTGTTGTGAGTTTTACTGAGGTGTTTCAATGGCTTCAAGTGGTGCGCTCTGTTGCTCCCGTGTTAAATGAGGAGTTGAAGCCAAAACTTTTGACGCTGCTCCCATGCATCTTCAAATGTGTTCAGCATTCTCATGTTGCTGTTAGATTAGCTGCTTCACGCTGCATCACTTCTCTGGCACAGTCAATGACTGTGAAAGTTATGGGAGCTGTGGTTGAAAATGCTATCCCAATGTTGGAAGATTCATCATCTGTTTATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTAGTTCAGGGGTTGGGTGTAGAGTTGGTCCCTTATGCTCCTCTATTGGTGGTTCCACTTCTGAGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACTCATAGTTTTGCTGCTCTTGTTCCTTTACTTCCTTTGGCTCGAGGCCTTCCTCAACCAATTGGACTAGGGGAAGGTGTATCTAGAAATGCAGAAGATTTGCAGTTTTTAGAGCAACTGCTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGGAGGTATCAGCAGGAAGGCATAAATTGGTTAGCTTTTCTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGTAATACAATCGGGAATGAGGATCTTCTGGCATCTTTAATTATCTGCCCATCAACTCTTGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCTGTTATATCTAGTCTTCAATATGTTGGTTCTGCTCAGGAACGAATGCTTCTTCGAGATCAGTTCTGTAAGCATAATGTCATTATAACATCATATGATGTTGTTCGTAAAGATGTTGATTTTCTGGGACAGCTACTCTGGAATTACTGCATTTTAGATGAAGGGCATATAATAAAAAATGCCAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAACACCGCTTGATTTTGAGTGGGACACCTATACAGAATAACATAATGGACTTGTGGTCCCTCTTCGATTTTCTGATGCCAGGCTTTCTCGGAACCGAGAGACAGTTCCAAGCTGCATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGTACTGGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTCCTTCGTAGAACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAATATAAACTTTACGAGCAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCTATTGTAACAACGAATGAGTCTGCTGCACCAGAAGGAAGTGGCACTTCTACTAAAGCGTCTTCACATGTCTTCCAGGCAATTGTATTTCTTCAATTATTAGTTAATTACTATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGTGACCATCAGCATAGAATTTATATTAGCTCTTTAGAGGCTTGTTTAAGATTAGATTTAACTTATGAAAAGCTCAAGCTAACAGCTATTCAAAGTATTTTGAATGAGTATGACTGGAGTTCAGAGAACAATTCTGATGGAGACGCTAAATTAATTCATTTCAGAGTCATCATTTTTTGTCGTCACTTTTTGGCATTGAGGATAGCGAGGTTGGATGGTTTTTCGGCTAGTGATGAATGTATATGTGGATGGCGGCTTGTGCACTCAGTGCCACCTCATCGCCGACAAGGAAGCCAAATGAATTTTAATAGTGATACTCAAAAAGACAAATTGCGATTGAACACCCATCATCAAAATGTGGACTTTAATTGCTGTTGTACTGACAAGTCTTTCTTCATTCAAATTTCTCGTATAATGATGAAATTCCAGTTTTCACTTCTAATTAGGGTTTACCGTCTTTCATTATTAGATAAAGTCAACATAAATCTTATTTTATTAAAGATTTTGTTGAATTACCGAGTCGTCGTGTTAAAAAATATTACAGTTTCTAAAAAAGAAACTACTGTTGTTTCTGTGAACATGTCAATGTCAAGCATGGCCGTGGGAGAGAATTTTGTAGTTGTTGTTGATGTCCCTGCGCCCGGCGGGAATTACAGTTTTCTCGCAGCTGGCTTTAGGCATGCCTGTGTTATCTCCGGTGATGGTGGTTTGACAGCAAGGTCCGAATGGTTGCATTCCTTGTGGTTGGATGTTCTAAACGCAGAGGAAGCCCGCTTGAGTCACGTGATCAGCATGGGAAATGGGAGCCCTTTGGAGGAGTTTTCTCTGGGGACACTGCTTCAAGTCACTAACAATTTCTCTGAGGAGAAGAGAGTTGGAGTTGGCAGCTTCGCTAGAATCTCTCTCCAGACTCCACCACAAGAACCTGGTCCGCTTGGTGGGGTTCTACGAAGACACTAA 6255 0.4115 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLTELFASVLSQMSENGISCSIEDLCAWPYLQSKITGSAFRSFDMNKVLEFGALLASGGQEYDIGNDSIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMVSKSDPHLNGIDRRVFTSCSAHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGGTEASGAQSLTPKGTCPDSLNYSKAFMDVNHDDDGFEHDGEGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILAHQGASAGVFKPDSHLGGTLFIELEDKSIPTTLKREREIDLNMQVSADEFDSNLKRPKLEDVSSPTFMDSVMTCNNITSETHGCNLTLDYENGQFNGNSNDMDLESHSDGSRDACKESASITEQKGHLDDNQMPSGNLIALRNLPQNCELMNSVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLRMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGGVLPACKSGLEDPDDDVRAVAADALIPAASAIVSLQDQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMAPNMYEVLRLGDKEMENGGGGGDCDGEENPYVLSTLAQRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSMEDLEIAASFYGASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENEFGMEFSLDSIKGSIPQDRNGDVPMNSVKIVVGADVDTSVTHTRVVTATALGYFASKLPVGSLKYVIDPLWSSLTSFSGVQRQVASMVLISWFKEIKLKNSSKNLDGIPGAVKGWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNVVKSSGMFDELLTTTQIELDRLSVDDAIGFASKIPALCNDSSANEFLAKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCVARKPCPNDKLIKNICSLTCMDPSETPQAKSLCTIESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELSLRLLCEKFGASLFDKLPKLWDCLTEVLKPIEDTKEKQFNSLPFLVVSFTEVFQWLQVVRSVAPVLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSLAQSMTVKVMGAVVENAIPMLEDSSSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRNTIGNEDLLASLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERMLLRDQFCKHNVIITSYDVVRKDVDFLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQAAYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQYKLYEQFSGSRVKQEMSSIVTTNESAAPEGSGTSTKASSHVFQAIVFLQLLVNYYTLVFVEHDWNPMRDHQHRIYISSLEACLRLDLTYEKLKLTAIQSILNEYDWSSENNSDGDAKLIHFRVIIFCRHFLALRIARLDGFSASDECICGWRLVHSVPPHRRQGSQMNFNSDTQKDKLRLNTHHQNVDFNCCCTDKSFFIQISRIMMKFQFSLLIRVYRLSLLDKVNINLILLKILLNYRVVVLKNITVSKKETTVVSVNMSMSSMAVGENFVVVVDVPAPGGNYSFLAAGFRHACVISGDGGLTARSEWLHSLWLDVLNAEEARLSHVISMGNGSPLEEFSLGTLLQVTNNFSEEKRVGVGSFARISLQTPPQEPGPLGGVLRRH 2084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01879 2084 FunFam TATA-binding protein-associated factor BTAF1 501 681 - -
Vian5g01879 2084 FunFam Uncharacterized protein 1182 1404 - -
Vian5g01879 2084 Gene3D - 4 94 IPR011989 -
Vian5g01879 2084 Gene3D - 1423 1694 IPR038718 -
Vian5g01879 2084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1674 1868 IPR027417 -
Vian5g01879 2084 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1453 1623 IPR014001 -
Vian5g01879 2084 Pfam SNF2-related domain 1459 1716 IPR000330 GO:0005524|GO:0140658
Vian5g01879 2084 MobiDBLite consensus disorder prediction 251 266 - -
Vian5g01879 2084 MobiDBLite consensus disorder prediction 426 463 - -
Vian5g01879 2084 MobiDBLite consensus disorder prediction 245 266 - -
Vian5g01879 2084 SMART ultradead3 1437 1633 IPR014001 -
Vian5g01879 2084 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Vian5g01879 2084 Gene3D - 489 672 IPR011989 -
Vian5g01879 2084 Gene3D - 1259 1422 IPR011989 -
Vian5g01879 2084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1424 1673 IPR027417 -
Vian5g01879 2084 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 1965 IPR044972 GO:0003677|GO:0016887|GO:0017025
Vian5g01879 2084 Pfam Domain of unknown function (DUF3535) 775 1229 IPR022707 -
Vian5g01879 2084 SUPERFAMILY ARM repeat 6 1480 IPR016024 -
Vian5g01879 2084 CDD DEXHc_Mot1 1441 1673 IPR044078 GO:0005524
Vian5g01879 2084 MobiDBLite consensus disorder prediction 434 453 - -
Vian5g01879 2084 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1411 1672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01879 Vian-Chr5 40820933 40849718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01879 1437 1705 RAD5 or RAD16-like Gene Family AT1G11100 29.595 2.20e-26 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian5g01879 DUF3535 2.9e-101 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01879 K15192 - gmx:100777977 3096.61