Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01876 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAGTTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCTACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTAGATGCTGCTCCCGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGAGGAGGGAGGAACTTCAGAGTGATGGGTTCTTTCCAGACAGGATTTGGAGGAGGAGTTGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCTATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCAGTTTATGGAAGTGGGCCAGGAGGGATGATGACGGGTGCTGCAGCTTTCTACCCGTATCTGCAGTACGGCGGAGAAGGGAGTGGCGGCGGTGGCACAAGCGGGGGCTATAGTTCCGGGCAGGGTTACGGTGTGAACTATGCCCCTCACCTCTTTCAGTATTCTCCGATTGCTTCCACTGCAGCAGGTGCCTATGCCCAGCACTATGGAACACCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACCGTGTCTCTTCAAGCTCCAATTCCTCATCGCTAG 825 0.5103 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSGQGYGVNYAPHLFQYSPIASTAAGAYAQHYGTPMSLAPSPALQSGVTVSLQAPIPHR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01876 274 PANTHER BOULE-RELATED 6 250 - -
Vian5g01876 274 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vian5g01876 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Vian5g01876 274 SUPERFAMILY RNA-binding domain, RBD 12 121 IPR035979 GO:0003676
Vian5g01876 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Vian5g01876 274 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Vian5g01876 274 Gene3D - 11 131 IPR012677 -
Vian5g01876 274 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01876 Vian-Chr5 40802899 40806085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01876 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 7.18e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01876 - - aip:107629746 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01876 5 40802899 40806085 Vian5g01876 5 40802899 40806085 ECH