Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01875 ATGCATGAAATCAATTTTCTTCCAATTTCAATTTCAGGAGATTCGGCTCGACTCATTACGGGAAGTGCGGACCAGATAGGCAAACTATGGAGCGTCCAAACTGGGCATCAATTGTACAGCTTCAATTTCGATTCTCCCGCCAGGTCCGTTGATTTCTCCGTCGGCGATAAGCTCGCCGTTATCACAGAACGCCCACTCAATGCTGTTGCAATGTCACCTCTTCTTGATCATATTCTTCAAGAAGAAACTGGGGGTGTGAAAGGGCATTTTGGACCAATTAACGCATTGGCTTTTAATCCTGATGGAAAAAGGTATATCCACTGTTCTTCACCTCCTTTTTGTGTTGCATCGTGA 354 0.4463 MHEINFLPISISGDSARLITGSADQIGKLWSVQTGHQLYSFNFDSPARSVDFSVGDKLAVITERPLNAVAMSPLLDHILQEETGGVKGHFGPINALAFNPDGKRYIHCSSPPFCVAS 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01875 117 SUPERFAMILY WD40 repeat-like 9 110 IPR036322 GO:0005515
Vian5g01875 117 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 10 63 - -
Vian5g01875 117 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 40 IPR001680 GO:0005515
Vian5g01875 117 Gene3D - 5 59 IPR015943 GO:0005515
Vian5g01875 117 Gene3D - 60 114 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01875 Vian-Chr5 40795722 40801015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01875 11 62 Eukaryotic Initiation Factors Gene Family AT2G46280 65.385 1.92e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01875 K03246 - ming:122078237 98.2117