Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01872 ATGAGCATCAGTGAAGAAGAAGGCAAAGGTGGCTCCAGGAAGCGCCGGCGTGAGGCGGAGGCGGAAACTGCATTCCGCGGAGTGCGGAAACGGAGCTGGGGACGTTACGTATCGGAGATAAGGCTGCCGGGTCAGAAAACCCGGATATGGCTTGGCTCCTTCGCGTCGCCTGAGATGGCGGCGAGGGCTTATGACTCAGCCGCTTTCTTCTTGAAAGGAACATCAGCCACCCTTAATTTCCCCGACCTCGTCCACTCCCTTCCTCGCCCTCTCTCCTCCTCCCGGAGAGACATACAATCCGCCGCCGCAACAGCCGCTCTCCACCCTCCTTCTCTCGGTACCGACACCAACAGCAATAGCAGCAGCTGGTTGGACAACTTGGGAGACGAATCCAGGATTTCGACGATGTCGTTTGAGGATGTGAAAGATGCCCCTCTGATGAGCCCCCTAAGGGTGGACTTGACTTTTGGAGATTTCTCATGGAACAACCTCTTCCATTTCAACTATGACGATGTTTTCATGTCATGA 528 0.553 MSISEEEGKGGSRKRRREAEAETAFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFASPEMAARAYDSAAFFLKGTSATLNFPDLVHSLPRPLSSSRRDIQSAAATAALHPPSLGTDTNSNSSSWLDNLGDESRISTMSFEDVKDAPLMSPLRVDLTFGDFSWNNLFHFNYDDVFMS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01872 175 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vian5g01872 175 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
Vian5g01872 175 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Vian5g01872 175 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700|GO:0006355
Vian5g01872 175 MobiDBLite consensus disorder prediction 98 121 - -
Vian5g01872 175 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Vian5g01872 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 122 - -
Vian5g01872 175 MobiDBLite consensus disorder prediction 1 22 - -
Vian5g01872 175 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Vian5g01872 175 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vian5g01872 175 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vian5g01872 175 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01872 Vian-Chr5 40779721 40780248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01872 14 110 AP2-EREBP Transcription Factor Family AT5G11590 58.763 5.08e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian5g01872 AP2 2.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01872 K09286 - gmx:100783790 206.453