Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01870 ATGCAAGGAAGGCAGGAAGAAATAAGGTGCAAAGAGAATGGGGGCAGGGTAAAGGGTAGCTTTAACCACTCCCGTCGGCGTAGTCACCGGCCGTCAACCCTTTCTATATGGTCACAGTGTGTGATGGTGGCGTTGACAACCAAGAAGATGGCTTCCTCTAATGGTGGTGTGCCGCCGGGATTTAGGTTTCATCCGACGGATGAAGAGCTTCTTCATTACTACTTGAAGAAGAAGGTCTCCTTTCAGAAGTTTGACATGGATGTTATTCGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGATTTGCAAGATGCCAATGACCCTCAAGGAAGCGCCAACGAAGATGGGTGGGTGGTGTGCAGAGTGTTCAAGAAGAAGAATTTATTCAAGATTGGAAATGAAGGTGGGTCTACACATAACCCAGATCAACAAATGAACAATTCCTCAAGCACTAACGGACGCTCCTTCATACACAGAGAAAACCATTACTTGCTACACCAACACCAAAATCATAGAAACTCACCAGGGCTCGAGCTTGATAAGCCTGAGCTCGCTCTCCATTACCCACACTTGCAAAATCCCCAATACTCACTGTTCCAGTCCCAAAACCTTCTTCAAACCCAAAAGCCTATGGTTTTTGACTACTCATATGCATCATCTCTACCTTCGGACACCCCTGTAATGGCAAAGCAACTTATGGGAAACCCTAGGGAGTGTGAGAGTGGCAGCGAGGGCCTAAGATATCAAGTTTCAGAGTCTGGCATTGAAGTTGGATCGTGCGAGCCAAATCAAGAAGTGGGTGGCGGAAGAGGTGAAGGAATCAACGAATGGGGCGTTCTTGATAGGCTAGTTACCTCCCATCTCGGGAATGAAGAATCAAACAAAGGGGTGAGGTTTGAGGAGACAAACCCTCAGTCTGTGCATCAGATCAACCAGCTTTCGTTACGGGGAGAGATGGATTTCTGGGCCTATGGAGGAAAACAATGA 987 0.4742 MQGRQEEIRCKENGGRVKGSFNHSRRRSHRPSTLSIWSQCVMVALTTKKMASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQDANDPQGSANEDGWVVCRVFKKKNLFKIGNEGGSTHNPDQQMNNSSSTNGRSFIHRENHYLLHQHQNHRNSPGLELDKPELALHYPHLQNPQYSLFQSQNLLQTQKPMVFDYSYASSLPSDTPVMAKQLMGNPRECESGSEGLRYQVSESGIEVGSCEPNQEVGGGRGEGINEWGVLDRLVTSHLGNEESNKGVRFEETNPQSVHQINQLSLRGEMDFWAYGGKQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01870 328 MobiDBLite consensus disorder prediction 132 151 - -
Vian5g01870 328 SUPERFAMILY NAC domain 53 117 IPR036093 GO:0003677|GO:0006355
Vian5g01870 328 MobiDBLite consensus disorder prediction 133 151 - -
Vian5g01870 328 Pfam No apical meristem (NAM) protein 58 120 IPR003441 GO:0003677|GO:0006355
Vian5g01870 328 Gene3D NAC domain 66 111 IPR036093 GO:0003677|GO:0006355
Vian5g01870 328 ProSiteProfiles NAC domain profile. 57 219 IPR003441 GO:0003677|GO:0006355
Vian5g01870 328 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 56 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01870 Vian-Chr5 40766800 40771651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01870 97 324 NAC Transcription Factor Family AT4G10350 41.079 2.32e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian5g01870 NAM 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01870 - - gmx:100804181 396.741