Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01869 ATGGTAGTCAACGAGAGACCATCCAAGAGGATGAAGAGGAGAGTCACAGTTGATCTCTATGATTTCCTCACTTTTCCGGCCACCGCCGACGCCTCCTCCGGCCAACCCTTTCGGACCTGTGTCCAACGCTTTCTCTCAGACCACGCGCGCATCACTTTCCCTCCCTCTTTATTTCCGTCTCTTATGACGTGGCAGATCTTGTTCCGTGTCGGAGACCTCGTTGATGGGCCCGATCTCTCACCTTCTGTTGTCACTCTTGACATTGTTGAGGAGGATGTTACTCGTTCTCGCACTTCTGTTTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTTTGTCGAAAGCGATATCATTTCATAATAAGGGCTGCAAGTAATGCAATCGAACCGTATCAAAGACCTTGTTCAAGATGTGGAAACCTTCTCCAATTATCTGAAACAAGCTGTAAATCGTGTAACTTTGCCATCACCGTGGATGACCTTGAGGACTGGGTGTATAATCAGATTGAAGATAACACCCATCTTCTTCATGGTGTGGTCCATTCCAATGGTTATGGTCACCTGCTTACTCTAAGTGGAAGAGAAGGTGGCTCTAAGCTTCTATCTGGATCTGATATTATGGATTTCTGGGACAGGCTATGTACTTCAATTTCTGTGAGGAAGGTTAGCGTGATGGACTTGTCCAAGAAATTCGGGCTGGAATACCGATTGCTTCATGCGATCACGAAAGGACATTCCTGGTATGGTAATTGGGCTTATGAATTTGGAACAGGCAGCTATGCTCTCACCCAAGATGCCTACAAAAACGCAGTGAATACCCTGTCAAGTATGCCCTTGTCATCATTTTCATTTCATGGACGGGGACCACGAAGCCGCCTGGAGTGTATTATTTCTCTTTACCAGTCTTTGGCAGAAACAGAACTTCTAAACATTCAAGATCTCTTCTCTTTTTTGTTGATGTTGATTCGTGAATGCCGTAAGCCAATAGCCATGAAAACTTTTAAGCAGACCAGTAATTTGTTGTGTACGTGGACGGGAAAAGATGTTGAAGAGGTGCAATGTGCTCTTGTCAAGGTATTGATTGCATCAGGTGCGTGTAACGAGTCTAAATGGGTGACAAGTCGTGCTCTGAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCACAGCTTCTTGACTACTGTCTTAAGCACTTCCCTGGGAAATTAGCAGCCAATGGGATGGTAGTTTGTTCACGATGTAATCCCGTTTCCTGTGCAATCGAGTTCAGGTTGGGGCCGATGAGTAATGGTCTAAATACATATTCAAGCTATCCTACTGAAAGGCAACTGATCTCTGACTTGACATTTTTATTCGACTCGATAATACATCCTGACAAAATGATGTCATACAGACCTAGGATTATGAGGAAAAGGGTTGCTGATTCAGCCAGGAAGCTCCTTGACTGTAAACAGTTTATGAAAGATTACAAGCCATATGAAATGGCCATCGAACTGCCTTCTGTTATCAGGTTGTGGTGTCATGTCGAACTTTCTGATCAGCCTAAGGACGATCCATCCCCACCGCCAGAGCTTATAGTGTTGCCTTTGAATGCTACCGTTGCTGAGCTCAAGAGCGAAGCCACTAGTGCTTTCCAAGAGGTGTATGCAATGTATAAGAGGTTTCAAGCTGAAGAACTCCTAGGATATGGGTCAATCAGTGACTCCCTCACCGTGAAGTTCTTGCTTGGAACAAGTGGATCAGTCCGCATTCAAGGTAAATGCCCAGCAAAACATGGGCTAAGCAGATTCCGAATGGAACGAGGAACTGAGGTGTGGAAGGTTGATTGCACTTGTGGGGCCAAGGATGATGACGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGGCATGCCTTCTAAGTTTGTTTGCATGAGGTGTGTCAACGTGTACCGTGAGGAAACAAAAAAATCACCATCATCTGTTGAAGAACCGAACGGAACCTGTATATTCAACTCATCTTGCAGAGATGAGGCAGCAGCTCCAACAGTTTCATGTAACATAACTGTGAATTTTGGTGTACGTTGA 2115 0.4544 MVVNERPSKRMKRRVTVDLYDFLTFPATADASSGQPFRTCVQRFLSDHARITFPPSLFPSLMTWQILFRVGDLVDGPDLSPSVVTLDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAIEPYQRPCSRCGNLLQLSETSCKSCNFAITVDDLEDWVYNQIEDNTHLLHGVVHSNGYGHLLTLSGREGGSKLLSGSDIMDFWDRLCTSISVRKVSVMDLSKKFGLEYRLLHAITKGHSWYGNWAYEFGTGSYALTQDAYKNAVNTLSSMPLSSFSFHGRGPRSRLECIISLYQSLAETELLNIQDLFSFLLMLIRECRKPIAMKTFKQTSNLLCTWTGKDVEEVQCALVKVLIASGACNESKWVTSRALKGAVCRGVSSPQLLDYCLKHFPGKLAANGMVVCSRCNPVSCAIEFRLGPMSNGLNTYSSYPTERQLISDLTFLFDSIIHPDKMMSYRPRIMRKRVADSARKLLDCKQFMKDYKPYEMAIELPSVIRLWCHVELSDQPKDDPSPPPELIVLPLNATVAELKSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTVKFLLGTSGSVRIQGKCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDNSDGMPSKFVCMRCVNVYREETKKSPSSVEEPNGTCIFNSSCRDEAAAPTVSCNITVNFGVR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01869 704 Pfam PHD-finger 612 657 IPR019787 -
Vian5g01869 704 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 14 664 - -
Vian5g01869 704 SUPERFAMILY FYVE/PHD zinc finger 601 658 IPR011011 -
Vian5g01869 704 ProSitePatterns Zinc finger PHD-type signature. 612 656 IPR019786 -
Vian5g01869 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 661 IPR013083 -
Vian5g01869 704 CDD PHD_MMD1_like 611 656 - -
Vian5g01869 704 SMART PHD_3 611 657 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01869 Vian-Chr5 40756726 40759542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01869 80 656 PHD Transcription Factor Family AT5G22260 27.778 4.91e-82 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian5g01869 PHD 2.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01869 K26271 - gmx:100780558 1263.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01869 5 40756726 40759542 Vian5g01869 5 40756726 40759542 ECH