Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01860 ATGACAATGATGCGAAAGACATTGTTGTCACTGTTATTAGTTTCCTCAGTTTTCTCAATAGCCACATCAACGAGGAGACATTCCAACAGCAACATAGATTGGTGGTGCAGCCAAACCCCGTACCCCGAGCCATGCAAATACTACATGCAACAAACCCATTACCATCACAAACTCAAACACAAATCCGAATTCCGGGCAATTCTCGTTCACTTGGCGTTGGAAAGAGCAGTGATCATGAGAAGGAAAGCACGTGACTTGGGGCACAACGGGATCGCCAAGAAGCAGAAATCAGTATTCCGTGATTGTTTAAAGCTCTACGACAACACCGTGTTCCATCTTAACCGTACCCTCAACGGCCTTCGGGAGAAGAGAAGCTGTTCACCCTTTGATGCGCAGACGTGGCTCAGCACGGCTCGCACAAACATCGAAACATGTCAGAACGGGGCGCTAGAACTCGGAGTCGAAGATTTCATGGTTCCCACGGAGAGATGCAATGTAACCGAGATTATAAGCAATGGCTTATTCGTGAACTGGGCTTTCCTGAAGTACGAAGCGGTTCATTATACGGAAGATGCAGAGGCTGATTTTCCAAGTTGGTTTTCCATGCACGAGAGGAAGCTGTTGCAGTCTTCTTCAATAAGGGCACATCTGGTGGTGGCCAAAGATGGTTCGGGGCATTTCAAGAGTGTCCAAGCTGCTATCAATGCCGCTGCAAGGAGAAGGATAAAGAGCAGATTCATCATTCACGTGAAGAGAGGAGTTTACAGAGAGAATATTGAGATTGACAAGACCAATGACAACATTATGTTGTTCGGTGATGGCATGAGAAATACCATTATAACAAGTGGCAGAAGCGTCAATGCCGGCTATACCACCTATAGCTCCGCAACAGCAGATCTTATGTTTTGTAGTGTGAATTCTTTGTGCCCAACCGAGGCATCACGGTTCACAGTTGCTAACCTTCTTGCTGGTCGCACTTGGTTGCCTGCCACTGGTGTGCCATTCACTTCTGGCCTTTGA 1020 0.4706 MTMMRKTLLSLLLVSSVFSIATSTRRHSNSNIDWWCSQTPYPEPCKYYMQQTHYHHKLKHKSEFRAILVHLALERAVIMRRKARDLGHNGIAKKQKSVFRDCLKLYDNTVFHLNRTLNGLREKRSCSPFDAQTWLSTARTNIETCQNGALELGVEDFMVPTERCNVTEIISNGLFVNWAFLKYEAVHYTEDAEADFPSWFSMHERKLLQSSSIRAHLVVAKDGSGHFKSVQAAINAAARRRIKSRFIIHVKRGVYRENIEIDKTNDNIMLFGDGMRNTIITSGRSVNAGYTTYSSATADLMFCSVNSLCPTEASRFTVANLLAGRTWLPATGVPFTSGL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01860 339 Pfam Plant invertase/pectin methylesterase inhibitor 31 174 IPR006501 GO:0004857
Vian5g01860 339 SUPERFAMILY Pectin lyase-like 213 298 IPR011050 -
Vian5g01860 339 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 178 IPR035513 -
Vian5g01860 339 PANTHER PECTINESTERASE 17 298 - -
Vian5g01860 339 Pfam Pectinesterase 217 298 IPR000070 GO:0030599|GO:0042545
Vian5g01860 339 CDD PMEI-like_3 34 177 - -
Vian5g01860 339 NCBIfam pectinesterase inhibitor domain 7 176 IPR006501 GO:0004857
Vian5g01860 339 SMART PMEI_2 27 176 IPR006501 GO:0004857
Vian5g01860 339 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 177 IPR035513 -
Vian5g01860 339 Gene3D - 210 307 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01860 Vian-Chr5 40693913 40695881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01860 22 300 Carbohydrate Esterase AT5G51500 51.761 9.33e-91 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01860 K01051 - gmx:100807908 517.309