Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01858 ATGGAAGCCATTTCTTCTAAGCATCTTCTGACAAATCTCTTGCTGATTTTTGCTTCTAGTTTCAGCACACTCTGTGCCAACACAGGCATTGAAAGACCACACCAAGAAGCCAACACAGTGTTCATCAGAACATCTTGCAGTTCCACAACTTATCCGAGACTCTGCTATAGCTCCTTAGTGAGGCAGGCAGAGTTGATCCAAACAAATCGTGTGCTTTTAACGGGCGCCGCCCTTAACGTGACTCTTGCATCGGCGAAATCGACCGCAGCTGTGGTGTCGATGATGGCGAAGAGGCAGGGGCTGAAGCCCAGAGAGGTCGCAGCGATGAAAGACTGTGTGGAGGTGCTGAGTGACTCGGTGGATGAACTCAGAAGGTCTATCGATGGGATGATTCATCTCAGAACCTCCAATTTTGAGATGACGATGAGTGACGTACAGACATGGGTGAGTGCTGCTTTGACTGATGAGAACACTTGCACAGATGGATTTCAAGAGAGTCCCACCGCTGCCGCCGCCGCCACCATTGGTGGTACAAACACTAAGACCCGTGTGAGAGGACTGGTTGTGCAGGTAGCCCAATTGACCAGCAATGCCTTGGCTTTGATTAATCAGCTAGCTAATCAAGGTTAA 630 0.4952 MEAISSKHLLTNLLLIFASSFSTLCANTGIERPHQEANTVFIRTSCSSTTYPRLCYSSLVRQAELIQTNRVLLTGAALNVTLASAKSTAAVVSMMAKRQGLKPREVAAMKDCVEVLSDSVDELRRSIDGMIHLRTSNFEMTMSDVQTWVSAALTDENTCTDGFQESPTAAAAATIGGTNTKTRVRGLVVQVAQLTSNALALINQLANQG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01858 209 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 207 IPR035513 -
Vian5g01858 209 PANTHER PECTINESTERASE INHIBITOR-LIKE 13 201 - -
Vian5g01858 209 CDD PMEI-like_3 44 207 - -
Vian5g01858 209 NCBIfam pectinesterase inhibitor domain 10 205 IPR006501 GO:0004857
Vian5g01858 209 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 206 IPR035513 -
Vian5g01858 209 FunFam Pectinesterase inhibitor 3 37 206 - -
Vian5g01858 209 SMART PMEI_2 37 201 IPR006501 GO:0004857
Vian5g01858 209 Pfam Plant invertase/pectin methylesterase inhibitor 41 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01858 Vian-Chr5 40688761 40689390 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01858 42 205 Carbohydrate Esterase AT1G53830 31.548 1.92e-21 89.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01858 5 40688761 40689390 Vian5g01858 5 40688761 40689390 ECH