Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01856 ATGGAAGCCATATCTTGCAAGCACCTTATCACGTCCCTTTTCATAATTCTTTCTTCTAGTCTCACCGCCGCACACGGTGGCAGAAGACTAAGTGAAAGACCATACCAAGAAGCGAGCACGGTGTTCATCAGAACATCTTGTAGTTCAACAACGTATCCAACACTCTGCTACAGCTCCCTGGTGAAGCATGCAGACTTGATCCAAACAAATCGCGTGGTGTTAGCTGGGACGGCCCTGAACGTGACTCTTGCGTCGGCGAAATCGACATCGGCAATGATGAGGACGCTGGGAAAGAGACAGGGGCTGAAGCCAAGAGAGGTGGCGGCGATGAAGGACTGTGTGGAGGAGCTGGGTGACTCGGTGGATGAACTCAGAAGGTCCATCGATGAGATGAGTCATCTTAGAGGGTCGAACTTTGAGATGACGATGAGCGACGTGCAAACGTGGGTGAGTGCTGCTCTGACGGATGAGAGCACCTGCACCGATGGCTTCCAAGAGACTGCCACCGGTGCTACAAACATTAAGAGCACTGTGAGAGGTCAAGTTGTGCAGGTAGCACAATTGACCAACAATGCATTGGCTTTGATAAATCAGCTAGCCAATTCTCATGGTTAA 615 0.5057 MEAISCKHLITSLFIILSSSLTAAHGGRRLSERPYQEASTVFIRTSCSSTTYPTLCYSSLVKHADLIQTNRVVLAGTALNVTLASAKSTSAMMRTLGKRQGLKPREVAAMKDCVEELGDSVDELRRSIDEMSHLRGSNFEMTMSDVQTWVSAALTDESTCTDGFQETATGATNIKSTVRGQVVQVAQLTNNALALINQLANSHG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01856 204 FunFam Pectinesterase inhibitor 3 38 200 - -
Vian5g01856 204 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Vian5g01856 204 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 199 IPR035513 -
Vian5g01856 204 SMART PMEI_2 38 195 IPR006501 GO:0004857
Vian5g01856 204 NCBIfam pectinesterase inhibitor domain 9 199 IPR006501 GO:0004857
Vian5g01856 204 CDD PMEI-like_3 45 201 - -
Vian5g01856 204 PANTHER PECTINESTERASE INHIBITOR-LIKE 10 195 - -
Vian5g01856 204 Pfam Plant invertase/pectin methylesterase inhibitor 42 195 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01856 Vian-Chr5 40681789 40682403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01856 32 202 Carbohydrate Esterase AT3G14310 30.460 3.21e-22 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01856 - - gmx:100305537 314.309