Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01847 ATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATTCTGCACCCGTAACAAAGTCTAGGCTGTGTGCGCACTCCAGTTTGTTGCCTTACTCCCATTCCGGGGCAACCTTTACGCATGGAATGTTATTGACTATCCCAAGGAAGAAAACAGGAATTCTTGAAGATGTTCGTTCAAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCAGCCAGGAAGATAACAAAGGACTTTAGCCATGGGTTTGCATCATCTGACTCTGATACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCTGCTCTTACATGTTTTGATCAAATCACAAACTATGCAAAAGGGAAAAGGATTGCGTTGTTTATGGATTATGATGGAACTCTTTCCCCAATTGTGGATAATCCTGACTGTGCGTTCATGTCAGACAATATGCGAGCTGCTGTTAAAAAGGTGGCAGAGTATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTATTTCAATTTGTAGGACTAACAGAACTCTACTACGCTGGTAGTCACGGGATGGACATCATTGGCCCTGTTAGACAATCTGAATCTGATAATCACCCGAATTGCATTAGGTTTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCCGCTGCTGAATTTCTGCCCATGATTAATGAGGTCCTCAAGTCTCTTGATGAGTGTACGAAAGACATTAAAGGTGCTAAAGTAGAGAACAATAAATTTTGCGTATCTGTGCACTACCGGAATGTTGATGAAAAGTATTGGGATTTGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCGCGTTTGCGCTTAACTCATGGCCGGAAGGTTTTAGAGATCCGACCAGTGATTAACTGGGATAAGGGAAAAGCTGTCACGTTTTTACTTGAGTCACTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCGGACTGACGAAGATGCATTCAAGGTTTTGAGAGAGGGGAATAAAGGTTATGGGATCTTGGTGTCTTCATCACCCAAAGAAAGCAACGCAGTTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAATCACTTGTGTTGTGGAAGTCAAGCTGCTTAAAAAGTCTTATATAG 1170 0.4214 MDLKSNHTPVLTDSAPVTKSRLCAHSSLLPYSHSGATFTHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPARKITKDFSHGFASSDSDTAGAYFSWLLKYPSALTCFDQITNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVFQFVGLTELYYAGSHGMDIIGPVRQSESDNHPNCIRFTDKQGKEVNLFQPAAEFLPMINEVLKSLDECTKDIKGAKVENNKFCVSVHYRNVDEKYWDLVGQRVHDVLKGYPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSSPKESNAVYSLRDPSEVMEFLKSLVLWKSSCLKSLI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01847 389 FunFam Trehalose 6-phosphate phosphatase 228 387 - -
Vian5g01847 389 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
Vian5g01847 389 Coils Coil 385 389 - -
Vian5g01847 389 CDD HAD_TPP 122 372 - -
Vian5g01847 389 SUPERFAMILY HAD-like 122 380 IPR036412 -
Vian5g01847 389 NCBIfam trehalose-phosphatase 118 378 IPR003337 GO:0003824|GO:0005992
Vian5g01847 389 FunFam Trehalose 6-phosphate phosphatase 121 209 - -
Vian5g01847 389 FunFam Trehalose 6-phosphate phosphatase 222 298 - -
Vian5g01847 389 Gene3D - 220 386 IPR023214 -
Vian5g01847 389 Gene3D - 121 203 IPR023214 -
Vian5g01847 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 29 383 IPR044651 GO:0004805|GO:0005992
Vian5g01847 389 NCBIfam HAD-IIB family hydrolase 123 341 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01847 Vian-Chr5 40622577 40624859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01847 115 377 Trehalose Biosynthesis Gene Families AT1G70290 26.429 2.38e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01847 K01087 - gmx:100819495 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01847 5 40622577 40624859 Vian5g01847 5 40622577 40624859 ECH