Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01837 ATGAAACCTTTTCTTCTCTTTCTCACATTCTTCTTCCTCTGCCAAACACACCCACTCCCAGTTCTCTCTGCCACAACCCTGCCTCTCCAACTCATCTCCCTCCTCTCAATTAAATCATCCCTCCAAGACCCTCTCAATAACCTCCACGACTGGGATCCCTCCTCCACCTTCTCCAACTCCAGTCCCCAACACCCAATATGGTGTTCATGGAGAGGCATCACATGCCACTCCAAAACATCACAGATCACTACCCTCGACCTCTCCCACCTCAATCTCTCCGGCTCAATCTCACCCCAAATCCGCCACCTCTCCACCTTAAACCACCTTAACCTCAGTGGAAATGACTTCAGCGGGAGTTTCCAATACGCCATTTTTGAACTAGCAGAACTCAGAACTCTAGACATCAGCCACAACTACTTCAACTCAACCTTCCCACCCGGCACATCAAAGCTCAAGTTCCTCAGACACTTCAACGCCTACAGCAACAGCTTCACCGGGCCCCTCCCCCTAGAGTTAACCAGCCTTCGTTTTCTGGAACACTTGAACCTCGGCGGAAGCTACTTCAGTGACAGGATTCCACCAAGCTACGGCACTTTCCCAAGACTCAAGTTTCTAGACTTAGCCGGGAACGCATTGGGAGGTTCGCTTCCACCCCAATTAGGCCACTTGACTGAACTGGAACACTTGGAAATTGGATACAACAATTTCTCAGGAACACTACCTTCAGAACTGTCATTGCTCTCTAATCTCAAATACTTGGACATCTCAACCGCCAACATCTCAGGGAACGTGATTCCAGAGCTGGGAGACCTCACCAACCTGGAGACACTTTTGCTGTTCAAGAACAGGTTAACAGGAGAAATCCCACCAACCATAGGAAGATTGAAGTTTCTAAAAACCCTTGACCTCTCAGATAACGAACTCACGGGGCCAATCCCCACCCAAGTCACCATGCTAACGGAACTAACCACGCTCAACCTGATGGAAAACAACCTGACCGGAGAAATACCACAGGGAATTGGAGACCTACCAAAGCTTGAGATTCTGTTCCTCTTCAACAACTCACTCACCGGAACCCTCCCTCAGCAACTTGGTTCCAACGGGTTACTACTGAAACTAGACGTTTCCACAAACTCACTCGAAGGTCCAATCCCTGAAAATGTCTGCAAAGGTAACAGGCTCGTGAGACTCATACTCTTTCTCAACAAGTTCAGTCATACCCTTCCACCATCTCTTGGGAGCTGCACCTCACTCGCAAGGGTTCGCATCCAAAACAATTTCCTCAACGGTTCAATCCCCGAAGGCCTCACGCTCCTCCCTAACCTTACATTCCTAGATATCAGCAGCAACAACTTCCAGGGTCGAATTCCGGAACACTTAGGTAACTTGCAGTACTTCAACATCTCCGGAAACTCTTTCGGAACCTCCTTACCTGCGTCTATTTGGAATGCAACTAATCTCGCGATCTTCTCCGCGGCTTCGTCGAACATCACTGGTCAAATTCCAGATTTCATTGGGTGTCAGCAACTGTATAAGCTCGAATTGCAGGGAAATTTCATCAATGGTACGATTCCATGGGACATTGGACACTGCCAGAAGCTGATTTTACTCAATCTGAGTCGAAACTCACTCACCGGAATCATTCCCTGGGAAATCTCCACTCTCCCTTCCATCACCGACGTTGATCTCTCTCACAATTCCCTCACCGGAACCATTCCGTCGAACTTCAACAACTGCTCCACTCTCGAGAATTTCAATGTCAGTTTCAACTCCCTCACCGGTCCAATCCCATCGTCCGGCATCTTCCCGAACCTCCATCCTTCCTCCTATTCCGGGAACCAGGGCCTCTGCGGCGGCGTGTTGGCCAAACCCTGCGCTGCCGACGCCCTCGCCGCTTCCGCCGATGATCAGGTCGACGTCCACCGCCAGCAGCCGAAGCGAACAGCCGGTGCAATCGTGTGGATCGTGGCCGCCGCGTTCGGCATCGGGCTCTTCGTGCTGGTTGCCGGGACGCGGTGCTTCCATGCGAACTACAACCGGCGGTTCGGAGAGGAGGTCGGGCCGTGGAAGTTAACGGCGTTCCAGCGGCTGAATTTCACGGCGGACGACGTGCTGGAGTGCTTGTCGGTGTCCGATAAGATATTAGGAATGGGATCGACGGGAACAGTTTACCGCGCCGAAATGACAGGTGGAGATATCATAGCGGTTAAGAAGCTTTGGGGAAAACAAAAGGAGAATATCCGACGGAGGAGAGGCGTTCTGGCAGAGGTGGAGGTGTTAGGAAACGTGAGACACAGGAATATCGTGAGGTTGTTAGGGTGCTGCAGCAATAAGGAGTGCACCATGCTGCTCTACGAGTACATGCCCAACGGCAACTTGGATGATTTATTGCATGCCAAAAACAAAGGTGATAATCTCGTCGCTGATTGGTTCACAAGGTACAAGATCGCCTTGGGCGTTGCTCAGGGAATCTCCTACCTCCACCACGACTGCGACCCCGTCATCGTCCACCGCGATCTCAAACCCAGTAACATTCTACTGGACGCCGATATGGAGGCAAGAGTCGCCGATTTCGGTGTCGCCAAGTTGATTCAGACCGACGAATCCATGTCCGTCATTGCCGGATCCTACGGCTACATTGCTCCAGAATATGCTTACACCCTTCAGGTGGATGAGAAGAGTGACATTTACAGCTATGGAGTGGTGCTGATGGAGATTCTGAGCGGAAAACGTTCTGTGGAAGCAGCATTTGGAGATGGGAACAGCATAGTGGATTGGGTGAGATCAAAGATAAAATCAAAAGATGGAATTGATGACATATTGGACAAAAATGCAGGAGCAGGTTGCAGTTCAGTGAGAGAAGAGATGATTCAGATGCTGAGAATTGCATTGCTTTGCACCAGTAAAAACCCTGCAGATAGACCTTCTATGAGGGATGTTGTGTTGATGCTGCAAGAGGCAAAGCCAAAGAGGAAATTGCAGGATAGTGTTGTAGGTGGATTTGGAGGGGACAATGTCGTTGCTGCTCCTGACATTCCCTTCCCACACAAGCCAATTGCAGAACAATGCTAA 3072 0.5033 MKPFLLFLTFFFLCQTHPLPVLSATTLPLQLISLLSIKSSLQDPLNNLHDWDPSSTFSNSSPQHPIWCSWRGITCHSKTSQITTLDLSHLNLSGSISPQIRHLSTLNHLNLSGNDFSGSFQYAIFELAELRTLDISHNYFNSTFPPGTSKLKFLRHFNAYSNSFTGPLPLELTSLRFLEHLNLGGSYFSDRIPPSYGTFPRLKFLDLAGNALGGSLPPQLGHLTELEHLEIGYNNFSGTLPSELSLLSNLKYLDISTANISGNVIPELGDLTNLETLLLFKNRLTGEIPPTIGRLKFLKTLDLSDNELTGPIPTQVTMLTELTTLNLMENNLTGEIPQGIGDLPKLEILFLFNNSLTGTLPQQLGSNGLLLKLDVSTNSLEGPIPENVCKGNRLVRLILFLNKFSHTLPPSLGSCTSLARVRIQNNFLNGSIPEGLTLLPNLTFLDISSNNFQGRIPEHLGNLQYFNISGNSFGTSLPASIWNATNLAIFSAASSNITGQIPDFIGCQQLYKLELQGNFINGTIPWDIGHCQKLILLNLSRNSLTGIIPWEISTLPSITDVDLSHNSLTGTIPSNFNNCSTLENFNVSFNSLTGPIPSSGIFPNLHPSSYSGNQGLCGGVLAKPCAADALAASADDQVDVHRQQPKRTAGAIVWIVAAAFGIGLFVLVAGTRCFHANYNRRFGEEVGPWKLTAFQRLNFTADDVLECLSVSDKILGMGSTGTVYRAEMTGGDIIAVKKLWGKQKENIRRRRGVLAEVEVLGNVRHRNIVRLLGCCSNKECTMLLYEYMPNGNLDDLLHAKNKGDNLVADWFTRYKIALGVAQGISYLHHDCDPVIVHRDLKPSNILLDADMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVEAAFGDGNSIVDWVRSKIKSKDGIDDILDKNAGAGCSSVREEMIQMLRIALLCTSKNPADRPSMRDVVLMLQEAKPKRKLQDSVVGGFGGDNVVAAPDIPFPHKPIAEQC 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01837 1023 SUPERFAMILY Protein kinase-like (PK-like) 712 984 IPR011009 -
Vian5g01837 1023 Pfam Leucine Rich Repeat 441 463 IPR001611 GO:0005515
Vian5g01837 1023 Gene3D Ribonuclease Inhibitor 80 340 IPR032675 -
Vian5g01837 1023 Gene3D Ribonuclease Inhibitor 341 632 IPR032675 -
Vian5g01837 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 340 631 - -
Vian5g01837 1023 Gene3D Transferase(Phosphotransferase) domain 1 788 999 - -
Vian5g01837 1023 SMART LRR_typ_2 223 247 IPR003591 -
Vian5g01837 1023 SMART LRR_typ_2 555 578 IPR003591 -
Vian5g01837 1023 SMART LRR_typ_2 199 222 IPR003591 -
Vian5g01837 1023 SMART LRR_typ_2 319 342 IPR003591 -
Vian5g01837 1023 SMART LRR_typ_2 127 151 IPR003591 -
Vian5g01837 1023 SMART LRR_typ_2 271 295 IPR003591 -
Vian5g01837 1023 SMART LRR_typ_2 460 484 IPR003591 -
Vian5g01837 1023 SMART LRR_typ_2 343 367 IPR003591 -
Vian5g01837 1023 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 678 787 - -
Vian5g01837 1023 SUPERFAMILY RNI-like 288 597 - -
Vian5g01837 1023 ProSiteProfiles Protein kinase domain profile. 709 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01837 1023 FunFam Leucine-rich repeat receptor-like protein kinase TDR isoform A 85 339 - -
Vian5g01837 1023 SMART serkin_6 709 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01837 1023 ProSitePatterns Protein kinases ATP-binding region signature. 715 738 IPR017441 GO:0005524
Vian5g01837 1023 Pfam Protein kinase domain 712 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01837 1023 FunFam leucine-rich repeat receptor-like protein kinase TDR 788 996 - -
Vian5g01837 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Vian5g01837 1023 SUPERFAMILY L domain-like 63 385 - -
Vian5g01837 1023 Pfam Leucine rich repeat 509 568 IPR001611 GO:0005515
Vian5g01837 1023 Pfam Leucine Rich repeat 297 310 IPR001611 GO:0005515
Vian5g01837 1023 Gene3D Phosphorylase Kinase; domain 1 695 787 - -
Vian5g01837 1023 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 243 986 - -
Vian5g01837 1023 Pfam Leucine rich repeat N-terminal domain 30 75 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01837 Vian-Chr5 40542681 40546231 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01837 3 999 Receptor kinase-like Gene Family AT1G08590 42.996 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian5g01837 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01837 - - gmx:100809695 1813.51