Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01836 ATGAAACGGGGAAGAGGAGAGAGCATAGGAGAATCCAGTTCTAGGGTTTCTCCAACTATTCAGAACCCCACAGCAGGCATCATCAAGCGACTTCGTCTCGAGAACTTCATGTGTCACTCCAAACACGAGACTGAGTTCGGAAACCATGTGAATTTCATCACGGGTCAAAACGGAAGTGGTAAGAGTGCAATCCTAACTGCACTGTGTGTTGCATTTGGCTGTCGGGCCAAAGGAACTCAAAGAGCATCCACTTTGAAGGATTTCATTAAAAATGGTGCCAGTAATGCTGTCATCCAAGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATATATGGTCGTGTTATCAATGTAGAACGTCGGATATCTGAATCCGCAAGTTCTACTACATTAAAAGATCACCTAGGAAGGAAAGTTGTTAGTCGAAAGGCAGAGCTTCAAGAAATAGTTGAACATTTTAATATCGATGTGGAGAATCCGTGTGTAATTATGACTCAAGACAAAAGCAGGGAATTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTTGAAAGCATTTTTAAGGAAATTACTATCGCATATGAAACAGTTAAAGAGTTAGAGGCTGCAATAAGGCCCATAGAGAATGAGCTTAATGAGCTGCAAGTTAAAATTAGAAACATGGAGCATGTTGAACAAATATCCATGCAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGCAACTAGAGGAGCAAAATATAAAGATTGAAAAGTTGAAGAACCGGATACCTACCTGCCAGGCTAAGATTGATCAACAACTGCATTTGGTTGAAAAGTTGAAGGAAAAATGCTCCAAGAAGAGAGATGAAATTGCAAGAATGTTGGAAAAGACATCACAAGTTAAGCAAATGAAGGAAAATTTAAACCAATCTGTGTCCATGGCAAAAAGAGAGGCATTTGGACTTGAGCGAGACTGCAAAAGCAAAACTAGCAACATACAGAAGATGGTACGACAACTTAAAATGCTTGAACAACAAGTACAGGATATTCACGAGCAGCATGCAAAAAATACTCAGGCTGAAGAATCTAACGTGGAGGAGAAACTGAAGGTGCTTAAAGATGAGGTTCATGCAGCTGAGTTAACCCTGAAGAGATTGAAAGAAGAAGATGCTTCTTTAATGGAGAGTATACGTAGGCAAAATGACGAAATCCAAAAGATAGCTGATAAGATTCATGATCATGAAAAAAATCACCATGGTACCATGTGCCGAATCCGTGATCTTCAACAACATCAAAGCAATAAGATTACTGTTTTCGGAGGAGCCAAAGTAATCAATTTATTACAAATAATTGAGAGATACCACCGAAGGTTTAAAATGCCTCCAATTGGTCCAATTGGTGCCCATCTGAAGCTTCTTCATGGTAATAAATGGGCACTTGCCCTTGAATATGCTATTGGGAGATTGCTCAATTCTTTTATAGTGACTAATCATGCGGATTGTCGTCTTTTAAAACAATGTGCGAAGGAAGCAAACTATGGTCACCTTCAAATTATTATTTATGATTTTTCAATCCCAAGGTTGAAGATACCACAACATATGCTTCCTGATACAGAACATCCATCAATTCTTTCTGTCTTACAATGCGATAATCACACTGTGATTAATGTCTTAGTGGATCAGGGAAATGTTGAGAGGCAAGTGCTAGTCAAGGATTATGAAGTTGGGAAAGTGGTTGCCTTTGAGCGAAGGATCCAAAATTTGAAGGAGGTCTACACAGCAAATGGATGTAGAATGTTTTCTCGAGGTCCAGTGCAGACTGTTCTTCATCCAAATAAGAGGCAAAGAACTGGTCGTCTTTGTGGTTCTTTTGAAGATGAGATTGAGAAACTTCATGCTGAAGCATCTGATGAACAAAGGATTGCCAATGACCTTAAAAAAAATAAAAGAGAGGCAGAAGTCAAGCTTGAGGAACTTGACAAATATATGAGTTCTATTAAGAGACAATGTGTAAATGCAAGTAAAAGTTTTACTTCTAAGAAGCTAGCTTTGGAGGAAGAAATGCATCTGCACTCCGCTGAAAATAATGCAACGCCTTTGTCCTCTGTTGATGAGCTTGTTGAAGAAATTTCAGAGATCCAGAAAAAAATAGAAGAAGAACAAGTTTTGCTAGATGGCCTTCAGAAAAACGGGCTTGAAGCAGCAGGAAAAGCAGATGATCTTAAATTAGAATTTGACAAACTTTGTGAATCAGCGAATGGTGAAATTGCTGCCCTAGAGAAAGCTGAGAGTGAACTTGTAGAAATTGAAAAAGAAATGGGTTCAGCAAATAAGGCAAAGGATCATTATGAGGGTGTCATGAAAAACAAGGTCCTAATTGATATTGAGGAGGCAGAGGACCACTATCAGGAGCTTACAAAGAAGCGCAAGGAAAGTGTTGAAAAGGCTTCCATAATATGCTCTCAGAATGAACTTGATTCGTTAGGAGGTTGTGATGGCAATACCCCAGAGCAAATCAGTGCTCAATTAGGAAGACTTAATCAGACACTAATGCGCGAGAGTCAAAGGTACTCGGAATCAATCGATGATCTTAGGATGCTGTATAAGAAAAAAGAGCGTAAGATTGCAAAAAGGCAGCAAGTTTACAGAACCCTTCAACAGAAATTGGATGCTTGCCGGAGAGCCTTGGAGTTACGTACGAGAAAGTTTCAAAGAAATGCAACATATCTGAAGCACCAACTTTCTTGGAAATTTAATGACCATTTGAGAAAGAAGGGGATTAGTGGACTTATCAAAGTTAATTATGAACAGAAAACCTTAATGATTGAGGTACAAATGCCACAAGATGCATCAAACAGAGCTGTTCGAGATACTAGGGGGCTTTCAGGTGGGGAGCGTTCTTTTTCAACATTGTGCTTTGCGTTGGCGCTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTCATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTAGTTGATTTTGCAGAGGCACATGGATCACAGTGGATTTTCATCACTCCGCATGATACTAGCATGGTGAGGGCTGGTGACAGGATAAAAAAGATGCAGATGGCTGCTCCTCGTTCTTGA 3195 0.395 MKRGRGESIGESSSRVSPTIQNPTAGIIKRLRLENFMCHSKHETEFGNHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKNGASNAVIQVEIQNEGEDAFKPEIYGRVINVERRISESASSTTLKDHLGRKVVSRKAELQEIVEHFNIDVENPCVIMTQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESIFKEITIAYETVKELEAAIRPIENELNELQVKIRNMEHVEQISMQVQQLKKKLAWSWVYDVDKQLEEQNIKIEKLKNRIPTCQAKIDQQLHLVEKLKEKCSKKRDEIARMLEKTSQVKQMKENLNQSVSMAKREAFGLERDCKSKTSNIQKMVRQLKMLEQQVQDIHEQHAKNTQAEESNVEEKLKVLKDEVHAAELTLKRLKEEDASLMESIRRQNDEIQKIADKIHDHEKNHHGTMCRIRDLQQHQSNKITVFGGAKVINLLQIIERYHRRFKMPPIGPIGAHLKLLHGNKWALALEYAIGRLLNSFIVTNHADCRLLKQCAKEANYGHLQIIIYDFSIPRLKIPQHMLPDTEHPSILSVLQCDNHTVINVLVDQGNVERQVLVKDYEVGKVVAFERRIQNLKEVYTANGCRMFSRGPVQTVLHPNKRQRTGRLCGSFEDEIEKLHAEASDEQRIANDLKKNKREAEVKLEELDKYMSSIKRQCVNASKSFTSKKLALEEEMHLHSAENNATPLSSVDELVEEISEIQKKIEEEQVLLDGLQKNGLEAAGKADDLKLEFDKLCESANGEIAALEKAESELVEIEKEMGSANKAKDHYEGVMKNKVLIDIEEAEDHYQELTKKRKESVEKASIICSQNELDSLGGCDGNTPEQISAQLGRLNQTLMRESQRYSESIDDLRMLYKKKERKIAKRQQVYRTLQQKLDACRRALELRTRKFQRNATYLKHQLSWKFNDHLRKKGISGLIKVNYEQKTLMIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQWIFITPHDTSMVRAGDRIKKMQMAAPRS 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01836 1064 Gene3D - 27 232 IPR027417 -
Vian5g01836 1064 Gene3D - 849 1061 IPR027417 -
Vian5g01836 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 1057 IPR027417 -
Vian5g01836 1064 Coils Coil 345 372 - -
Vian5g01836 1064 Coils Coil 374 436 - -
Vian5g01836 1064 Coils Coil 771 798 - -
Vian5g01836 1064 Coils Coil 807 834 - -
Vian5g01836 1064 Coils Coil 647 688 - -
Vian5g01836 1064 MobiDBLite consensus disorder prediction 1 21 - -
Vian5g01836 1064 Pfam RecF/RecN/SMC N terminal domain 28 1059 IPR003395 -
Vian5g01836 1064 Coils Coil 722 749 - -
Vian5g01836 1064 Coils Coil 261 316 - -
Vian5g01836 1064 Coils Coil 215 242 - -
Vian5g01836 1064 Coils Coil 887 907 - -
Vian5g01836 1064 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 21 1063 - -
Vian5g01836 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 367 IPR027417 -
Vian5g01836 1064 SUPERFAMILY Smc hinge domain 464 604 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01836 Vian-Chr5 40511695 40540230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01836 12 1064 Structural Maintenance of Chromosomes family AT5G61460 59.621 0.0 1216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01836 K22804 - gmx:100816916 1761.5