Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01831 ATGAATAACAATACGTGTTATGCCATAGCAATCCCAGCTATGGTGGTGCTTTTGCTGGCTATGTGTGAAGCCACTTCAGGGTTAACACAAGCTGATGCTCTTCTTAGGTGGAAACAAAGTCTACCTGATCAACCCATTCTGGAGTCGTGGGTGATCAACTCCACTGCAACAACTCAAACTCCATGTTCATGGCGAGGTATCACGTGTGATTCCCAAGGCACTGTCACTGTCATAAACTTGGCTTATACTGGACTTGCAGGTACCCTTCAAAATCTCAACTTGTCTGTTTTTCCAAACCTTCTTCGTCTTGATCTCAAAGTAAACAATCTCACTGGCACCATACCACAAAACATTGGGGTGCTCTCAAACCTCCAGTTTCTTGACCTTTCCACCAACTTTCTCAATGGCACTCTGCCTCTTTCCATTGCCAATCTGACTCAAGTTTTTGAGCTTGATGTGTCGAGAAATGATGTATCAGGGGTATTAGACCCTTCCCTGTTTCCTGATGGATCAAACAGCCCCAAAAGTGGCCTCATTGGTATCAGGAACCTCCTCTTTCAGGACACCCTGCTGGGTGGCAGAATCCCAGATGAAATAGGGAACATTAGAAACCTGACTCTTCTAGCTCTTGATGGAAACAGCTTCGATGGCCCTATTCCGCCTTCTCTTGGCAACTGCACGCATTTAAGCATTCTCAGAATGCCTCAAAACCAACTCTCAGGGCCAATACCTCCCAGTATCGGTAAATTAACCAATCTAACCGATGTTCGCTTTTTCTCCAACAACTTAAATGGTACTGTTCCCCCAGAATTAGGAAACTTGTCTTCCTTGATTGTGCTGCATCTTGCTGAGAACAACTTGGTTGGTGAGTTACCACCAGAAGTGTGCAAAAGTGGGAAACTTGTAAATTTTAGTGCAGCCTTTAATAGTTTCACTGGCCCTATTCCAAGAAGCCTTAGAGACTGTCCATCCTTGTACAGGGTTCGACTTGAATACAACCGGCTGACAGGTTTTGCGGATCAGGATTTTGGAGTGTATCCCAACCTCACTTACATGGACTTCAGCTATAACAAGGTGGAAGGTGGTATTTCTGCAAATTGGGGTGCCTGCAAAAGCTTGCAATTTCTCAACATGGCTGGAAATAGAGTAAGTGGTTACATTCCAGGTGAGATTTTTCAGTTGGACCAACTACAAGAGCTCGACCTATCCTCCAACCAATTGTTAGCACAGATTCCACCACAGATAGGAAATTCCTCCAACTTGTACAACTTAAATTTAAGTCACAACAATCTCTCTGGTGTGTTACCAGCAGAAATTGGAAAACTTTCCAGTTTGAGGTCCTTAGATCTGTCCATGAACGTGCTGTTCGGATCAATCCCAAAGCAGATAGGTGACCTCTCCTACTTGCAAAATTTAAATCTAAGCTACAACAAATTCAATGGCACAATCCCCTACCAAATTGGAAACCTGGCAGATTTACAATATTTTTTGGATTTGAGTTACAATTCTCTTTCAGGAGATATTCCCGGTGATATTGGCAGGCTTTCAAATTTGATAAGCTTGAATATCTCTCACAACAATATTTCAGGTTCCATCCCTCACTCTCTAAGTGAAGTGCTGAGTTTGTCAGAAATCAACCTCTCCAACAATAATTTGGAGGGTCAAGTTCCCGAAGGTGGCATATTCAACTCTTCTTATTCCCTGGATTTGAGCAACAACAAAGATCTTTGTGGCCATATTCGAGGTTTGCGTCCTTGTAGTGTCTCTGTCTCCAAACCTGACGGTGGATCAAGTAAAAGAAACAAGGCTGTGATCACCATTGCAGCTTCCCTTGGAGGTGCTCTTTTTATTTCTCTGGTGTTAGTTGGGATTTTCTGCTTTAGCTACAAGAGAAAATCAAGAGCTCAAAGGCAAAGAAATTCGTTCAGTAGACTGAATCCATTTTCAATCTGGTACTTCAATGGGAGAGTTGTGTATAGAGACATAATTGAAGCTACCGAGAACTTTGATAGCCGATATTCCATTGGGGAAGGAGCACTGGGGAAAGTTTATAAAGCGGAGATGGCAGGAGGTGAAGTATTTGCTGTAAAAAAGTTGAAGTGTGATTCAGAGAACTTAGACTTTGAGAGAATAAAATCCTTTGAGAATGAGGTAAAAGCCATGACAGAAACACGCCACAGAAACATCGTGAAGCTTTATGGATTTTGCTCTCAAGGGGTGCACACCTTTCTAATTTATGAGTACATGGACAGTGGAAACTTATCTGACATGCTTAGAGATGAAAAGGGAGCAATGAAACTGAATTGGCACAAAAGGGTTGAAATTATCAGAAATGTAGCAAGCGCTTTGTCTTACATGCACCATGATTGCGCTTCACCTTTAATTCACAGAGACATATCCAGCAAGAACGTTTTGCTGTCCCTCAATCTTTCAGCTCATGTCTCAGATTTTGGAACTGCCAGGTTTCTGAAACCGGATTCTCCCATTTGGACATCATTTGCCGGCACATATGGTTATGCTGCTCCAGAGCTAGCTTACACAATGGCAGTGAGTGAGAAATGTGATGTGTTCAGCTTTGGCGTTTTGGCTTTGGAGATTCTTACGGGAAAGCACCCTGGTGATATTGTTTCCTACATGCAAAATTGTAGTGAACAGAAAGTAAACATGAAAGAGATTTTAGACCCTCGTCTCTTGCCTCCTTCCAAGAAGCATTTGAAGCAAGTTGATTTGATTGCTAACATAGCTCTTTCATGTTTAAAGACAAACCCTCAATCTAGACCAAGTATGCGAAGCATAGATCAGCTGCTTGAAATGGAGACTGCAAACTTATAA 2832 0.4241 MNNNTCYAIAIPAMVVLLLAMCEATSGLTQADALLRWKQSLPDQPILESWVINSTATTQTPCSWRGITCDSQGTVTVINLAYTGLAGTLQNLNLSVFPNLLRLDLKVNNLTGTIPQNIGVLSNLQFLDLSTNFLNGTLPLSIANLTQVFELDVSRNDVSGVLDPSLFPDGSNSPKSGLIGIRNLLFQDTLLGGRIPDEIGNIRNLTLLALDGNSFDGPIPPSLGNCTHLSILRMPQNQLSGPIPPSIGKLTNLTDVRFFSNNLNGTVPPELGNLSSLIVLHLAENNLVGELPPEVCKSGKLVNFSAAFNSFTGPIPRSLRDCPSLYRVRLEYNRLTGFADQDFGVYPNLTYMDFSYNKVEGGISANWGACKSLQFLNMAGNRVSGYIPGEIFQLDQLQELDLSSNQLLAQIPPQIGNSSNLYNLNLSHNNLSGVLPAEIGKLSSLRSLDLSMNVLFGSIPKQIGDLSYLQNLNLSYNKFNGTIPYQIGNLADLQYFLDLSYNSLSGDIPGDIGRLSNLISLNISHNNISGSIPHSLSEVLSLSEINLSNNNLEGQVPEGGIFNSSYSLDLSNNKDLCGHIRGLRPCSVSVSKPDGGSSKRNKAVITIAASLGGALFISLVLVGIFCFSYKRKSRAQRQRNSFSRLNPFSIWYFNGRVVYRDIIEATENFDSRYSIGEGALGKVYKAEMAGGEVFAVKKLKCDSENLDFERIKSFENEVKAMTETRHRNIVKLYGFCSQGVHTFLIYEYMDSGNLSDMLRDEKGAMKLNWHKRVEIIRNVASALSYMHHDCASPLIHRDISSKNVLLSLNLSAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVSEKCDVFSFGVLALEILTGKHPGDIVSYMQNCSEQKVNMKEILDPRLLPPSKKHLKQVDLIANIALSCLKTNPQSRPSMRSIDQLLEMETANL 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01831 943 FunFam Leucine-rich repeat receptor-like protein kinase TDR 271 588 - -
Vian5g01831 943 CDD TM_EGFR-like 600 638 - -
Vian5g01831 943 Gene3D Ribonuclease Inhibitor 169 297 IPR032675 -
Vian5g01831 943 SMART LRR_typ_2 515 539 IPR003591 -
Vian5g01831 943 SMART LRR_typ_2 274 298 IPR003591 -
Vian5g01831 943 SMART LRR_typ_2 121 145 IPR003591 -
Vian5g01831 943 SMART LRR_typ_2 442 466 IPR003591 -
Vian5g01831 943 SMART LRR_typ_2 394 418 IPR003591 -
Vian5g01831 943 FunFam Nuclear pore complex protein NUP107 28 168 - -
Vian5g01831 943 FunFam MDIS1-interacting receptor like kinase 2 749 942 - -
Vian5g01831 943 Gene3D Transferase(Phosphotransferase) domain 1 749 942 - -
Vian5g01831 943 Pfam Leucine Rich Repeat 517 537 IPR001611 GO:0005515
Vian5g01831 943 ProSiteProfiles Protein kinase domain profile. 669 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01831 943 SMART serkin_6 669 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01831 943 Gene3D Ribonuclease Inhibitor 25 108 IPR032675 -
Vian5g01831 943 FunFam Leucine-rich repeat receptor protein kinase MSP1 631 748 - -
Vian5g01831 943 SUPERFAMILY L domain-like 44 408 - -
Vian5g01831 943 SUPERFAMILY Protein kinase-like (PK-like) 642 937 IPR011009 -
Vian5g01831 943 Pfam Protein kinase domain 673 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01831 943 Gene3D Ribonuclease Inhibitor 300 588 IPR032675 -
Vian5g01831 943 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 234 936 - -
Vian5g01831 943 SUPERFAMILY L domain-like 346 580 - -
Vian5g01831 943 PRINTS Leucine-rich repeat signature 394 407 - -
Vian5g01831 943 PRINTS Leucine-rich repeat signature 124 137 - -
Vian5g01831 943 ProSitePatterns Tyrosine protein kinases specific active-site signature. 794 806 IPR008266 GO:0004672|GO:0006468
Vian5g01831 943 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515
Vian5g01831 943 Pfam Leucine rich repeat N-terminal domain 29 70 IPR013210 -
Vian5g01831 943 Gene3D Ribonuclease Inhibitor 109 168 IPR032675 -
Vian5g01831 943 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 176 266 - -
Vian5g01831 943 Gene3D Phosphorylase Kinase; domain 1 629 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01831 Vian-Chr5 40474117 40477084 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01831 14 842 Receptor kinase-like Gene Family AT4G08850 38.403 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian5g01831 Pkinase 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01831 - - var:108339503 1769.98