Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01828 ATGGCGAAATTTGGTTCTCCTGCAACTCACATTGAGGACACAGTTCCTCAAGTCCCATCAGCTCTTACTATCGTTGCCATCGACACTAACTTAACCGTTCTTGAATTCATCAAGAACACATGCAACCATGATGGTATTCAAGTTCTGGCGTGCTCTGAATCTCAAAGTGCCGTGAATGCCTTACGGAAAAGAAAACAGCGTATTGATTTGATACTCGTAGAGGTTGATATGCCAATCATGAACGGCTATGAATTTCTAGAATTTATCAAGAAAGAACAAGTTGATGTTCCTCTCATAATGATGTCTTCGGATAATAGTAGGGCTTCGGTAATGAGGGCGATGGAACATGGAGCTTATGATTATTGGGTTAAACCTTTGCAGGAGTTTAATTTCACGATTATGCGGGCACGTGTATTTCAGAAGAAGTGCATGATTGCAGATAAGCTGCAAAAGGATAGTGGTTGCTTAAAAGATGATGATAAAAGAAGAGGAAGAAGTGATAATTCTGAACTGGCTTCATGTATGGTTCATAGGAGCAATAGCAACTTTGAAGAAGCAGATGTTGTTGATGAATCATGCAATCCATCTCCCACCAAGAAGCCTCGTGTTGTATGGGATCAAAAACTGAATGCTTCATTTGTCAGTGCTGTCCTAATAATTGGAATTGAAAAGGCTACGCCAAAGAAAGTTCTTGAAGTCATGAATGACCCTCGTTTGGAAAGAACACATATTGCCAGTCATTTGCAGAAATACAGAAAATATTTAAAACAGCAGCAACAGAAACAGGAACAGCAACAGCAACAGAATGACATGTCTCTCGTTTCAGGGAGACAAATAGAGCGACAACAATCGAAACAGAAGGACATGTCATTGCCAAGGACGTCTGCATTGCAACCTTGTTCTGCTACTGCAACGACAAATTTTCATCCTGGTTTTACCGGTAACATGGAAGAGGAAGCTTTGGCACATGGTCATCCTTTAGCAGCCTTTCCTAACGTTGTCATTCCCGAGAATTTTTCAGAAGAACAATCAAATATAAATAGACTACTGTCTAACAATTTTAATGCAGAGCAAGTTTTGGCACATGATCATCCTTCAGCAATCTTTCCTAACATTGCCAGTAACCTGATATCTCAACCGGGAACTCTAGATGATGCTTCTATATATGGATTACTTACTCCATCTGATACACCGCTATTTGTCAATCCCACTATTCTACAGATAGATACTATGCAGCAGCCGATGAATCATAATCAAATGTATCCAATGAACTTTCAGCCATCTTTCACGATGATTTCTGGAAATCCAGCTTTTGCCTCCCAGAATTACAACTTTGGCATGAACATGGGTCATGGTTCTCAATCTATACAAGATGGAAATAGCATAGGTGAAGGAATTCTTGATCAATATAGCACTATAGATTCCATTTATCATCCAGAGTTTCAAAATGCAGGTTTGCCAAGTGGTGCTGTCAGACGTTTTGCTGCAAGTGATTATAGGAGCCAAAATCCCTATATTGATGGTAACTTGTATCAGCAATGA 1542 0.3975 MAKFGSPATHIEDTVPQVPSALTIVAIDTNLTVLEFIKNTCNHDGIQVLACSESQSAVNALRKRKQRIDLILVEVDMPIMNGYEFLEFIKKEQVDVPLIMMSSDNSRASVMRAMEHGAYDYWVKPLQEFNFTIMRARVFQKKCMIADKLQKDSGCLKDDDKRRGRSDNSELASCMVHRSNSNFEEADVVDESCNPSPTKKPRVVWDQKLNASFVSAVLIIGIEKATPKKVLEVMNDPRLERTHIASHLQKYRKYLKQQQQKQEQQQQQNDMSLVSGRQIERQQSKQKDMSLPRTSALQPCSATATTNFHPGFTGNMEEEALAHGHPLAAFPNVVIPENFSEEQSNINRLLSNNFNAEQVLAHDHPSAIFPNIASNLISQPGTLDDASIYGLLTPSDTPLFVNPTILQIDTMQQPMNHNQMYPMNFQPSFTMISGNPAFASQNYNFGMNMGHGSQSIQDGNSIGEGILDQYSTIDSIYHPEFQNAGLPSGAVRRFAASDYRSQNPYIDGNLYQQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01828 513 SMART REC_2 22 133 IPR001789 GO:0000160
Vian5g01828 513 FunFam Two-component response regulator 196 259 - -
Vian5g01828 513 ProSiteProfiles Response regulatory domain profile. 23 139 IPR001789 GO:0000160
Vian5g01828 513 MobiDBLite consensus disorder prediction 253 296 - -
Vian5g01828 513 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Vian5g01828 513 Gene3D - 197 258 - -
Vian5g01828 513 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 275 IPR045279 GO:0009736
Vian5g01828 513 SUPERFAMILY CheY-like 21 140 IPR011006 -
Vian5g01828 513 Coils Coil 248 268 - -
Vian5g01828 513 Gene3D - 21 153 - -
Vian5g01828 513 SUPERFAMILY Homeodomain-like 198 256 IPR009057 -
Vian5g01828 513 MobiDBLite consensus disorder prediction 253 280 - -
Vian5g01828 513 Pfam Response regulator receiver domain 24 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01828 Vian-Chr5 40463090 40464982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01828 13 265 Response Regulator Gene Family AT2G25180 32.955 1.21e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian5g01828 Response_reg 1.5e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01828 - - var:108339502 996.882