Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01827 ATGTGGACACATGTTGTTAGAAAATCCATGAATGAGGATAAGATGAGAAAAAATATCCGTAATAGCTTAGAAGATGATAATCAGAATTCTAGATTTGTGTTTTCTTCTAGCGATGAAATTTCAAGAGAAGTTGGTAATGCTGGTCAATCAAAGAAGCCTCGTGTAGTGTGGACAACAGATCTGCATGGGAAATTTGTCAAAGCTGTGAATCAACTTGGACTTGAAAATGCTGTGCCAAACAAGATTCAGCAACTCATGAATACGCCTCATTTGACAAGAAATCATGTTGCAAGCCATTTGCAGAAATATAGAAATGTTTTGAAGGAAAAAGCTAGGAGAGAGAAAGAGAGACAACCAGAACCAAAAAGAGAGCAGCAATCTGTCCCAGATATACAAATGGATAATCATCATGCAGAAGAAGCTTTTGGTTTTGCACTCAGTGATCCAGTTGCTATTTATCCAACCATTGCTATTCCTCAGAATTTTCCACAGACTCTAGATTCTGAATGTGGAGTATGGTCTCCATATAATGCAATCTTAGCAGAAAATGAGGCTATGCTTCAGAGAAACACTGTGTCATTGGATTCATTGCAGCAGCAGCAGCAGCAGCAGCATCAGCAGAAGAACATGCAGTCTTCAGTGTTGCAGCAGCTGCAGCAGAAGCTCCAGGAGCAGCTGCAGCAGCAGCTCCAGCAGCAGCTCCAGCAGCAGCAGCAGCAGCTCCAGCAGCAGCAGCAGCAGAACATGCAGTCTTCAGTGATGCAGAATCAAGTTCCTTGGATAAATTTTCAACCATCTTCTGTGATAATTTCTGAAAATCCATATTTGGTGACCCAGAATGATAACTTTGGCAGAAACATTGATCAGAGAAGCATTCAGTAA 882 0.4127 MWTHVVRKSMNEDKMRKNIRNSLEDDNQNSRFVFSSSDEISREVGNAGQSKKPRVVWTTDLHGKFVKAVNQLGLENAVPNKIQQLMNTPHLTRNHVASHLQKYRNVLKEKARREKERQPEPKREQQSVPDIQMDNHHAEEAFGFALSDPVAIYPTIAIPQNFPQTLDSECGVWSPYNAILAENEAMLQRNTVSLDSLQQQQQQQHQQKNMQSSVLQQLQQKLQEQLQQQLQQQLQQQQQQLQQQQQQNMQSSVMQNQVPWINFQPSSVIISENPYLVTQNDNFGRNIDQRSIQ 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01827 293 Coils Coil 208 254 - -
Vian5g01827 293 FunFam Two-component response regulator 48 110 - -
Vian5g01827 293 Gene3D - 49 110 - -
Vian5g01827 293 SUPERFAMILY Homeodomain-like 50 108 IPR009057 -
Vian5g01827 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 52 105 IPR006447 GO:0003677
Vian5g01827 293 Pfam Myb-like DNA-binding domain 54 104 IPR001005 -
Vian5g01827 293 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 47 257 IPR044841 GO:0003700|GO:0006355
Vian5g01827 293 MobiDBLite consensus disorder prediction 109 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01827 Vian-Chr5 40458150 40459323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01827 46 108 Response Regulator Gene Family AT3G16857 65.079 7.53e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian5g01827 Myb_DNA-binding 6.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01827 - - var:108339501 480.33