Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01821 ATGGAAGCGGCGGTGGTGGACGTCGGTTCTAAGCTTCTCAAAGCCGGTTTTGCAATTCCCGACCAGACTCCGGCCATGATAATTCCCACTAAAATGAAACAACTGCTTGATGATGGATCGGCCACTGATAGCTCACTGGCTGAAAATGTCACTGTTGATCCAGTTGTGCGGGGATTTATTAGAGATTGGGATGCCATTGAGGATTTGTTGCAGCATGTTTTATATACTGGTCTGGGATGGGAAATTGGCAATGAAGGTCAAATACTCTTTACAGATCCACTTTGTACCCCAAAGGCCAACAAAGAACAGTTGGTGCAATTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCTTCAGAACAAGCAGTGTTATCACTGTATGCTGTGGGACGTATCTCAGGCTGCACTGTTGATATTGGACATGGAAAAATAGGGTCTGTGGGTAACAAGATATCTGACGGCCTGCCTTTTTATATTGCACCAGTAATTGAGGGTGCTGTTCACCATATTGCCTCAAGAAGATTTGAATTTGGAGGTATTGATCTAACTAATTTCCTAGCTCAAGAACTAGGCAAGACCAATCCAAAAGTAAATATCAGCCTGTCTGATGTGGAGAAAATGAAAGAGCAGTACTCATGCTGTGCTGTAGATGAGTTAGCTTATCAAAAGACCCAATATTTGTGTCCTGTGGAGGAGCATACCCTTCCTGATGGACAGGTGATAAGAATTGGGAGAGAAAGATTTACGGTCGGGGAAGCTTTATTCCGGCCATGTCTATTGGGTTTAGAGGCTCATGGCATTGTTGATCAGCTTGTCCGTGCTATTTCAACTGTGTCATCTGATAATCAACGACAGCTGCTGGAGAATACGGTGGTTTGTGGTGCCACTTCATCTATGGCAGGTTTTGAAGAGAGATTTCAAAAAGAATCTAGCTTAAGTTCATCTGCCGTTCAACCTACCCTTGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCAATACTTGCGAAAGTCGTTTTCCCTCAAAATCAGCATATAACCAAGGCAGACTATGATGAAACCGGACCTTCCATTATTCACCGGAAATGCTTCTGA 1125 0.432 MEAAVVDVGSKLLKAGFAIPDQTPAMIIPTKMKQLLDDGSATDSSLAENVTVDPVVRGFIRDWDAIEDLLQHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIGSVGNKISDGLPFYIAPVIEGAVHHIASRRFEFGGIDLTNFLAQELGKTNPKVNISLSDVEKMKEQYSCCAVDELAYQKTQYLCPVEEHTLPDGQVIRIGRERFTVGEALFRPCLLGLEAHGIVDQLVRAISTVSSDNQRQLLENTVVCGATSSMAGFEERFQKESSLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIIHRKCF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01821 374 SMART actin_3 1 374 IPR004000 -
Vian5g01821 374 CDD NBD_sugar-kinase_HSP70_actin 4 181 - -
Vian5g01821 374 SUPERFAMILY Actin-like ATPase domain 131 374 IPR043129 -
Vian5g01821 374 FunFam Actin-related protein 7 4 127 - -
Vian5g01821 374 Pfam Actin 2 374 IPR004000 -
Vian5g01821 374 FunFam Actin-related protein 7 178 265 - -
Vian5g01821 374 Gene3D - 123 337 - -
Vian5g01821 374 PANTHER ACTIN 4 367 IPR004000 -
Vian5g01821 374 Gene3D Actin; Chain A, domain 4 178 265 - -
Vian5g01821 374 Gene3D - 5 368 - -
Vian5g01821 374 PRINTS Actin signature 45 67 IPR004000 -
Vian5g01821 374 PRINTS Actin signature 230 246 IPR004000 -
Vian5g01821 374 PRINTS Actin signature 125 144 IPR004000 -
Vian5g01821 374 PRINTS Actin signature 100 113 IPR004000 -
Vian5g01821 374 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01821 Vian-Chr5 40411587 40417450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01821 5 374 Cytoskeleton Gene Families AT3G12110 35.052 5.95e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01821 K16615 - gmx:100813266 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01821 5 40411587 40417450 Vian5g01821 5 40411587 40417450 ECH