Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01799 ATGGTTGAAGATTGGAATAGTATGAGAGTGAATGATGGATGGCGATGGAGAATGGAGGAAGTTCAAGAGTCTCAACCCCAACCATCGCCTGGTCAAGAAGATGAAAACGAAGTGATTACTGAAAGTTCAGCATTTGTTAAAGGGGAGCCAGCCCCAGAATTCAGTAGTAGCCCCCCAAAAGTTGACTCTGAAGTTGAGGTCCTTCACGAGAAGGTCACCAAACAAATCATTAAGGAAGGCCATGGCCAGAAGCCTTCCAAATATTCAACTTGTTTCTTCCATTACAGGGCTTGGTCTGAGAAAACACAGCACAAGTTTGAAGACACATGGCAGGAGCAAAGGCCAATTGAGATGGTCTTGGGTAAAGAGAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGTGCATTGGTGCGTGTAGGCTGGGAGTTAGGATATGGAGAGGAAGGAAGCTTTTCTTTTCCAAACGTTCCACCCATGGCAGATTTAGTTTATGAAGTTGAACTCATTGGCTTCGATGAAACGAAAGAAGGGAAAGCTCGCAGTGATATGACCGTGGAAGAAAGGATTGGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCGTATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAATATAGAGATATGGCTCTGGCTGTAAAGAATCCGTGCCATCTTAACATGGCAGCTTGTTTGATTAAGCTGAACCGTTATGAAGAAGCTATAGGACAATGCAGCATTGCACTGGGTGAGGATGAGACCAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACAGATGCTGCCAGGGAAGATTTTCTAAAGGCACGTAAACATGCTCCTCAAGACAAAGCAATTGCAAGAGAACTGAAATTGCTTGCTGAACATGACAAGGCCGTTTACCAAAAGCAGAAAGAGATATATAAAGGAATATTTGGACCAAGGCCTGAACCAGTTCCTAAGCCAAGAAACTGGCTCATATTTATTTGGCAGTGGTTGCTTTCAGTATTCAATGGCCTTGTCAGCCTCTTCAAGCGTGAAAGGCTTAAATCTGACTAA 1164 0.4442 MVEDWNSMRVNDGWRWRMEEVQESQPQPSPGQEDENEVITESSAFVKGEPAPEFSSSPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFFHYRAWSEKTQHKFEDTWQEQRPIEMVLGKEKKEMTGLGIGVASMKAGERALVRVGWELGYGEEGSFSFPNVPPMADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIALGEDETNVKALFRRGKARAALGQTDAAREDFLKARKHAPQDKAIARELKLLAEHDKAVYQKQKEIYKGIFGPRPEPVPKPRNWLIFIWQWLLSVFNGLVSLFKRERLKSD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01799 387 SUPERFAMILY FKBP-like 64 179 - -
Vian5g01799 387 SMART tpr_5 251 284 IPR019734 GO:0005515
Vian5g01799 387 SMART tpr_5 285 318 IPR019734 GO:0005515
Vian5g01799 387 SMART tpr_5 200 233 IPR019734 GO:0005515
Vian5g01799 387 SUPERFAMILY TPR-like 192 343 IPR011990 GO:0005515
Vian5g01799 387 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 88 180 IPR001179 GO:0003755
Vian5g01799 387 ProSiteProfiles TPR repeat profile. 285 318 IPR019734 GO:0005515
Vian5g01799 387 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 84 177 IPR001179 GO:0003755
Vian5g01799 387 Gene3D Tetratricopeptide repeat domain 182 313 IPR011990 GO:0005515
Vian5g01799 387 MobiDBLite consensus disorder prediction 13 39 - -
Vian5g01799 387 MobiDBLite consensus disorder prediction 22 39 - -
Vian5g01799 387 Gene3D - 56 181 IPR046357 GO:0003755
Vian5g01799 387 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 115 356 IPR039663 -
Vian5g01799 387 FunFam Peptidylprolyl isomerase 185 313 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01799 71 347 Calmodulin-binding Proteins AT3G25230 32.500 5.40e-30 119