LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g01796	ATGGCAGAGAGTGTAGTTACCTTTGTTTTAGATCATTTAGCCCAGCTTGCCTCACGCGAAGCTAACTTGCTGTGTGGCGTGGAGGACAGGGTCCAGTCCCTCCAGTACGAACTTCAAATGATCAAAGAACTCCTCAATACCACAAAGAGAAAGAAGGGAATGGAACATACTGTTTTGAACCAAATCAGAGATGTGGCCCACTTAGCTGAGGATGTCATCGACACTTTCGTAGCCAAAGTTTCCATTTACAAGAGGAGAACCATTCTCGGGAGGATGCTCCGTGGCTTTGGCCAAGTAAGGTTGCTGCACCACGTAGGCCACAAAATAGACAAGCTCAAAACCACTCTCAACGAGATACGCGACAACAAGGACAAATATGATGCTTTCAAAGAAACCACTGATCAATTGGCAGCGGAAGAGGAGGAGAAGGAAAGGTTGCAATTGCTGCACAAGCTAAGAAGAGATGTGGAGGAAGAGAATGTAGTTGGCTTTGTCCAGGACTCCAAGGATGTCGTCATGCGACTCCTAGGAGGTGGTTCAAATCGTGAAGTTGTCTCTGTCGTTGGCATGGGGGGATTGGGGAAGACCACCCTTGCCCGAAAGGTCTATAATAGCAGCCAGGTGATGAGCCACTTCGATTGTCATGCATGGGTTTATGTCTCAAACGAGTGTAGAGTTCATGATCTTTTGATTGACCTTCATAAGCATTTGATGCCAGATTTAGAACTGCAACGTAGAGGCAACAAAAGAGGCAAGAAAAGCGCAGGAGACATTAAGGACCTTAGTAAGGAGGAACTGAAGAAACATGTGTGGAACTACTTGGAGAGGAAAAGGTATCTTGTGGTGGTAGATGACTTGTGGAAAAGGCAGGATTGGGATGAGCTGAAAGATGCATTTCCAGACAACAACAGAGGCAGCAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGTGATGATGTTCCTCACCATCTTCAATTCCTTAGTGAAAAAGAAAGTTGGAAGTTGTTTTGCCGGAAAGCGTTTAGGGGTAAAAACTGCCCTTCTGATTTGGAGCCTCTAGGAAAGCAAATGGTTCAAAGTTGTCGTGGTTTGCCGCTCTCCATCATTGTCTTAGGAGGGTTGTTAGCCAACAAGGAAAAGTCAGATAGAGAATGGTCTAAAGTGGTAGGTCATGTTAATTGGTATCTGACTCGAGATGAGACCCAAGTGAAGGATATAGTTCTCAAACTCAGCTACGACAACTTGCCAAGGAGACTAAAACCATGTTTTCTCTATCTTGGCTTATTTCCTGAAGACTTTGAAATACCTGTTACGCCATTATTGCAAAAATGGGTTGCGGAGGGTTTTATACAAGATACAGGAAATAGAGACCCAGATGATGTTGCGGAAGACTACTTGTACGAGCTCATCGATCGCAGTTTGGTCCAGGTAGCAAAAATGGATTTTAATGGAGGTTTGAAGACATGTAAGGTTCATGATCTTCTTAGAGATCTTTGCATATCAGAGAGCAAAGAGGACAAAGTGTTTGAAGTTTGCACAAACAATAACATTCTACTCCCTACCAAACCTCGTAGACTGTCCATTCAGGTAGACATGGGTCACTACATTTCTTCAAGCAATAATGACCATTCATGTATTCGTTCCCTGTTTTTCTTTGGGCCAAAGTATGAGGTTCATGGCAGAGAGTGGAAATGGCTTTTGGACGACTTCAAATTGGTTCGAGTGTTAGAGTTTGGACCTAACAGGTGTCAAAAGATCCCTTCCAATTTAGGGAATTTCATCCACTTAAGGTACTTGAGAATAGACTTAATGTTTGGTACATTTGTTCCAGATTCAATACTCAACCTTTGGAATCTACAAGCCATAGATCTGGGTATTTGGAGGTATGACGTTCCGATTTCTTTCCCTATTCAATTGTGGAAACTCAAATATTTAAGGCATTTGAATACACAAGGGCCTATCAAGTTGCGAGGAAGATGTTCACCATCCTCATATGAGAAGATGTGGAATCTTCAAACCATCTCTCCCCTTATACTCAATGTGCAAGCAACGTCTCTAATAGGGAAAGGAATATTCCCCAATATTAAGAGTATGGGGTTGGATGTGGAGGATCATGGTTATGAAGGTAAATTTCCCAATTTATTGCAGAACCTACAACAATTAATGCATTTGAATAAATTGGTGATTTTGTTAGATTCCAAGTCCCAAGAACTGGTTCAAAACCTAGGACAATTAAGTTGTCTAACTATCTTAATCATTGATAATGTTTTGGACCTTCTAACCTCTGAAGTCATATTTCCCCCAAACATTACAGAGTTAACGTTGTCATGGATTAAGTGCATTACTGATGAGGGGATGAATAGTCTCGCAAATCACTCCAAACTCAAATTTTTGAGACTTTTAGGAAATCCACTTGAGTCGGAAGATTCCATTGACCTTAATTGTGTCAGTGGCAGTTTCCCGCAGCTGGAAGTGTTGCAAATGGAATATTTGAAACTTCGAAAGTGGGAATTAGGCAATGGTGCAATGCGGAGGCTTCAAAATGTGATTATCCGTGATTGTCAATCATTAGATAATCTTCCAAATGAATTATGTTCTTTGAATCGATTGAGAAAAGTGCATATAACGGACTCTCCTTCAAAACAAACGACTCATATCTTAAGAATTTTGGAAACAAATAATGGAGTTCAAGTCGTTATAGGAGATTTTTCACCTTGGAATGATGACATTTATTACAGACAACGACTCTTATTTTTTGCGCATAAGGCAGCAGAAGATTTTATGCAATCCATATCCCAGTCGTGA	2820	0.4142	MAESVVTFVLDHLAQLASREANLLCGVEDRVQSLQYELQMIKELLNTTKRKKGMEHTVLNQIRDVAHLAEDVIDTFVAKVSIYKRRTILGRMLRGFGQVRLLHHVGHKIDKLKTTLNEIRDNKDKYDAFKETTDQLAAEEEEKERLQLLHKLRRDVEEENVVGFVQDSKDVVMRLLGGGSNREVVSVVGMGGLGKTTLARKVYNSSQVMSHFDCHAWVYVSNECRVHDLLIDLHKHLMPDLELQRRGNKRGKKSAGDIKDLSKEELKKHVWNYLERKRYLVVVDDLWKRQDWDELKDAFPDNNRGSRILITSRLKEVALHAGDDVPHHLQFLSEKESWKLFCRKAFRGKNCPSDLEPLGKQMVQSCRGLPLSIIVLGGLLANKEKSDREWSKVVGHVNWYLTRDETQVKDIVLKLSYDNLPRRLKPCFLYLGLFPEDFEIPVTPLLQKWVAEGFIQDTGNRDPDDVAEDYLYELIDRSLVQVAKMDFNGGLKTCKVHDLLRDLCISESKEDKVFEVCTNNNILLPTKPRRLSIQVDMGHYISSSNNDHSCIRSLFFFGPKYEVHGREWKWLLDDFKLVRVLEFGPNRCQKIPSNLGNFIHLRYLRIDLMFGTFVPDSILNLWNLQAIDLGIWRYDVPISFPIQLWKLKYLRHLNTQGPIKLRGRCSPSSYEKMWNLQTISPLILNVQATSLIGKGIFPNIKSMGLDVEDHGYEGKFPNLLQNLQQLMHLNKLVILLDSKSQELVQNLGQLSCLTILIIDNVLDLLTSEVIFPPNITELTLSWIKCITDEGMNSLANHSKLKFLRLLGNPLESEDSIDLNCVSGSFPQLEVLQMEYLKLRKWELGNGAMRRLQNVIIRDCQSLDNLPNELCSLNRLRKVHITDSPSKQTTHILRILETNNGVQVVIGDFSPWNDDIYYRQRLLFFAHKAAEDFMQSISQS	939

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g01796	939	FunFam	Probable disease resistance protein At1g63360	417	506	-	-
	Vian5g01796	939	SUPERFAMILY	L domain-like	495	887	-	-
	Vian5g01796	939	CDD	RX-CC_like	2	121	IPR038005	-
	Vian5g01796	939	Gene3D	-	5	96	-	-
	Vian5g01796	939	Coils	Coil	129	159	-	-
	Vian5g01796	939	Gene3D	-	147	325	IPR027417	-
	Vian5g01796	939	Gene3D	Ribonuclease Inhibitor	516	909	IPR032675	-
	Vian5g01796	939	PANTHER	DISEASE RESISTANCE PROTEIN RP	32	860	IPR044974	GO:0006952
	Vian5g01796	939	FunFam	Probable disease resistance protein At5g66910	331	418	-	-
	Vian5g01796	939	FunFam	Probable disease resistance protein At1g61300	143	326	-	-
	Vian5g01796	939	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	147	431	IPR027417	-
	Vian5g01796	939	PRINTS	Disease resistance protein signature	366	380	-	-
	Vian5g01796	939	PRINTS	Disease resistance protein signature	846	862	-	-
	Vian5g01796	939	PRINTS	Disease resistance protein signature	273	287	-	-
	Vian5g01796	939	PRINTS	Disease resistance protein signature	184	199	-	-
	Vian5g01796	939	Gene3D	-	417	507	IPR036388	-
	Vian5g01796	939	Gene3D	-	331	416	IPR042197	-
	Vian5g01796	939	Pfam	NB-ARC domain	170	419	IPR002182	GO:0043531
	Vian5g01796	939	Pfam	Rx N-terminal domain	5	81	IPR041118	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g01796	Vian-Chr5	40184836	40187655	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g01796	185	503	WRKY Transcription Factor Family	AT5G45050	24.534	3.24e-08	55.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g01796	-		-	vra:106779070	1536.55