Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01794 ATGGGGTATCTATACCTTTCTTGCAGAGCCGAATCCGCAGTTTCAACTTCCGATTCGGTGGCTTCTTCCAAAGCTACCGGAGAGAAAGATAAAGAGAAGGAGAGAAGCGGCATCAAGATCCAGGAGTTTCAGTACAGGGACCTCGAGGCTGCTACCAATGGCTTCTCCGACCGCAAGCTTCTCGGCAAAGGGAGTCACGGTTATGTCTACAAGGCGGTGGTTCGGGGCCGTCCCGTGGCGGTGAAGCGGCCGTCGCGGCCGCATCATCATGGGGTTGTTCCTCGGCCGGTGTCTTCTTCCGCGCCGCTGGAGATCACGAACGAGGTGGACAATGAGATCGACATCTTGTCCAAAATCCAGAGCCCCAGGTTGGTGAATTTGGTGGGTTTCACGAACGATTCAAGAGACAGGCTTTTGGTGGTGGAGTTCATGAGCAATGGCACCCTTTACGATGTTCTTCATTCCTCTCCGAGGCCTCCCAATTGGGGTAGGAGGATTCGTTTGGCTCTGCAAACTGCTAAAGCCATTGACACGCTTCACTCCTCGTCCCCTCCTGTGATTCACCGTGACATAAAGTCTGCGAACGTTCTCATCGACCGCAGCTACAATGCGAGATTGGGGGATTTTGGTTTGGCTTTGAGAGGCCATGTTGATGACTACAGACTCAGGTCCACTCCTCCTGCAGGCACCATGGGCTATCTTGACCCTTGTTATGTAACTCCTGATAATTTGAGCACCAAAACTGATGTTTTCAGCTTTGGGATTTTGCTGCTGGAGATTATAAGCGGAAGGAAGGCCATTGACATCACTTATTCACCACCTTCTATCGTGGATTGGGCTATTCCTCTCATCAAGAAAGGGAAGCTTTTGGCTGTTTATGATCCTAGAATTGCACCTCCGAAGGATCCGGTTGTGAGGAAGCAGTTGGCCGTGATTGCTGCCAAGTGTGTGAGGTCTTGCAGGGAGAGGAGACCTTCCATGAATGAGGTTGTTACTTGGCTCTGTGGGCTGTGTAAACTGGTGCCTCTTCATTCTTGGAATGGTTTTAACAACCCTTGCATGATGGTTGAGACTGTGGGGCGCCCGGTTGAAGCAAGAAATGGTAATGGTGAATTCAATTCTAGGCTGGCAGGTGTGGAAGAGGGAAAAATTGAAGCTTTGGATGGAAGACTTTCCAAATCTGCAATGAGATATTCCCGGAGGGTGTATTCTGATTTGGGGTTCAGCAGCAACTTGATGGACTTGATGGCTACCACTGAGGAGCCTGAATTTCTGAGAGATGCTGATGGGATGGATCATAGTTCTAAATCTGCTGAACAAGTTTCTAGCTCCAGGTTTGGCAGTGGAAGGTATTCCATAAGAGGGAGGAACCTATACAGGCCATGTGGCAGTGACAAGGACGCCTTTGGCTTCAGTAAAGGTCGGATTGTAGGTCAGACTGAGACCACTTCAAAACAGGACGAGGTTTCTGGTTCAAATTCGAAGAATTTGAATTCTCTGGTTGCTGAGGTTGTCTAG 1518 0.4967 MGYLYLSCRAESAVSTSDSVASSKATGEKDKEKERSGIKIQEFQYRDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRPHHHGVVPRPVSSSAPLEITNEVDNEIDILSKIQSPRLVNLVGFTNDSRDRLLVVEFMSNGTLYDVLHSSPRPPNWGRRIRLALQTAKAIDTLHSSSPPVIHRDIKSANVLIDRSYNARLGDFGLALRGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPVVRKQLAVIAAKCVRSCRERRPSMNEVVTWLCGLCKLVPLHSWNGFNNPCMMVETVGRPVEARNGNGEFNSRLAGVEEGKIEALDGRLSKSAMRYSRRVYSDLGFSSNLMDLMATTEEPEFLRDADGMDHSSKSAEQVSSSRFGSGRYSIRGRNLYRPCGSDKDAFGFSKGRIVGQTETTSKQDEVSGSNSKNLNSLVAEVV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01794 505 SUPERFAMILY Protein kinase-like (PK-like) 38 334 IPR011009 -
Vian5g01794 505 FunFam Serine/threonine-protein kinase-like protein At1g28390 25 143 - -
Vian5g01794 505 PANTHER OS01G0253100 PROTEIN 21 336 - -
Vian5g01794 505 Pfam Protein kinase domain 56 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01794 505 Gene3D Transferase(Phosphotransferase) domain 1 144 342 - -
Vian5g01794 505 ProSitePatterns Protein kinases ATP-binding region signature. 61 82 IPR017441 GO:0005524
Vian5g01794 505 MobiDBLite consensus disorder prediction 12 36 - -
Vian5g01794 505 SMART serkin_6 55 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01794 505 ProSiteProfiles Protein kinase domain profile. 55 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g01794 505 Gene3D Phosphorylase Kinase; domain 1 25 143 - -
Vian5g01794 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Vian5g01794 505 FunFam Serine/threonine-protein kinase-like protein 144 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01794 Vian-Chr5 40164924 40166441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01794 4 334 Receptor kinase-like Gene Family AT3G59420 41.739 1.35e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vian5g01794 Pkinase 1.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01794 - - vum:124832395 984.171