Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian5g01784 | ATGGAGGAGTCATGCGCGCTGTGTAAGAAGAGGGCGGCGATGTTGTGCGACGCGGACCAGGCAAAGCTGTGCTGGGAGTGCGACGGCAAAGTTCACAGCGCCAATTTCTTGGTGGCGAGGCATTCTCGTGTGCTTCTGTGTCGTTCGTGTCATTCTCTCACTCCCTGGAAAGCCTCCGGCACCAAACTCACGCCCTCCATCTCCTTTTGTCAACCTTGTCTCGGGGATCGAACTGCCAGGTTGCGGCTCTTGGTCAACGATGTTCGCCAACCACAAAAAGAAGGGGAGAATGAAGCGCCTCCACCGTCCTCTGCTTCTGCCACGTCACCACCCCGTCCTGCCGCTTTACCATTAAGAAATCACTCTTCCTCTATCGATTCTCATCGATCTGAACGTAAAGTTCAGAACAGAGTTCATGCACAGTGTTTGAATGTTGAAGAATATAGTTTCCATGTACTCATTACAGGAATCTGGGACAGATACAACATTTGA | 492 | 0.5142 | MEESCALCKKRAAMLCDADQAKLCWECDGKVHSANFLVARHSRVLLCRSCHSLTPWKASGTKLTPSISFCQPCLGDRTARLRLLVNDVRQPQKEGENEAPPPSSASATSPPRPAALPLRNHSSSIDSHRSERKVQNRVHAQCLNVEEYSFHVLITGIWDRYNI | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian5g01784 | 163 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 4 | 103 | - | - | |
| Vian5g01784 | 163 | SMART | bboxneu5 | 1 | 46 | IPR000315 | GO:0008270 | |
| Vian5g01784 | 163 | MobiDBLite | consensus disorder prediction | 87 | 132 | - | - | |
| Vian5g01784 | 163 | CDD | Bbox1_BBX-like | 5 | 46 | - | - | |
| Vian5g01784 | 163 | Pfam | B-box zinc finger | 4 | 44 | IPR000315 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian5g01784 | Vian-Chr5 | 40083822 | 40085319 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian5g01784 | 1 | 79 | C2C2-CO-like Transcription Factor Family | AT4G27310 | 56.962 | 1.25e-29 | 106 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian5g01784 | - | - | gmx:100818267 | 145.591 |